Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 0.0e+00 1438.3 718 100.0
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.7e-241 838.6 718 62.4
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 5.4e-160 568.9 745 46.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 2.1e-159 567.0 741 46.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.6e-154 550.1 696 48.3
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 3.8e-153 546.2 737 44.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.6e-148 530.8 755 45.3
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 5.8e-146 522.3 745 43.8
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.1e-140 503.8 752 44.1
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 6.9e-139 498.8 756 41.8
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 1.5e-133 481.1 751 41.0
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.9e-133 480.7 754 39.9
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.6e-127 461.1 758 39.2
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.6e-127 459.5 754 40.2
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.3e-126 457.2 762 39.2
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 5.1e-126 456.1 750 39.3
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 3.3e-125 453.4 736 39.0
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.8e-124 450.3 705 41.7
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.5e-122 444.5 736 39.7
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.0e-122 444.1 716 41.5
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.4e-120 438.0 732 38.9
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 6.9e-115 419.1 736 39.5
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 3.4e-114 416.8 802 36.7
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.7e-111 407.1 753 37.6
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.8e-108 397.1 391 54.0
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 3.7e-108 396.7 757 38.8
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 4.2e-104 383.3 756 38.2
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 5.5e-104 382.9 766 36.8
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.0e-102 378.6 779 36.8
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 3.9e-102 376.7 750 37.2
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.5e-101 374.8 721 38.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.7e-97 361.3 728 37.8
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.9e-97 360.5 744 35.2
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 8.5e-97 359.0 726 36.5
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.8e-94 351.3 750 37.5
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 6.7e-94 349.4 720 35.4
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 7.5e-93 345.9 799 33.9
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 3.7e-92 343.6 741 35.8
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 9.1e-91 339.0 713 36.9
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 3.5e-90 337.0 709 34.6
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.5e-90 336.7 705 37.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.2e-89 334.3 693 37.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 3.8e-89 333.6 756 35.1
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 6.8e-86 322.8 766 34.5
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 2.8e-79 300.8 762 33.2
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 3.6e-79 300.4 743 33.2
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.0e-78 298.9 726 35.0
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.0e-77 294.7 727 32.7
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 4.9e-76 290.0 708 32.5
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.1e-75 288.9 734 33.4
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.1e-75 288.9 723 34.2
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.8e-75 288.1 584 34.6
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 9.2e-75 285.8 753 32.0
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.9e-74 283.1 752 32.8
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 2.9e-73 280.8 708 33.6
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.8e-73 280.4 407 44.2
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 6.6e-73 279.6 757 31.0
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-71 275.4 724 32.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.1e-71 274.6 722 32.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.4e-70 271.9 735 31.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.5e-69 268.5 725 32.6
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 5.8e-69 266.5 753 35.2
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.3e-68 265.4 725 32.1
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 3.7e-68 263.8 748 34.1
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 6.4e-68 263.1 740 31.5
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 5.4e-67 260.0 724 30.8
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.0e-66 258.1 508 36.6
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.5e-66 257.3 413 42.4
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 3.0e-65 254.2 724 30.4
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 3.0e-65 254.2 786 29.4
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.6e-63 248.4 732 31.4
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.2e-62 243.4 452 37.2
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 2.0e-61 241.5 529 36.5
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 2.9e-60 237.7 733 32.1
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.4e-60 236.5 781 28.2
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 8.3e-60 236.1 463 38.0
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.4e-59 235.3 546 32.4
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.2e-55 222.2 462 34.0
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 8.1e-55 219.5 407 37.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.5e-53 215.3 446 36.3
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 3.7e-52 210.7 325 39.4
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.4e-52 209.9 495 32.5
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 7.1e-51 206.5 704 27.8
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.6e-48 196.8 228 44.7
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.2e-47 195.7 402 37.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.7e-44 185.3 397 34.3
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 3.8e-44 184.1 620 29.7
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.4e-44 183.3 482 31.3
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 6.0e-42 176.8 226 43.8
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.5e-40 172.2 372 36.3
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.5e-40 171.4 735 26.7
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 2.5e-40 171.4 394 35.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 7.3e-40 169.9 261 44.4
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.2e-39 169.1 735 26.7
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.2e-39 169.1 375 36.8
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.8e-38 165.2 427 34.7
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.5e-37 162.2 373 36.2
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 2.0e-37 161.8 408 31.9
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.3e-36 159.1 399 32.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-36 158.7 369 34.7
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 1.4e-35 155.6 720 25.8
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.9e-35 155.2 226 40.3
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 3.2e-35 154.5 607 28.8
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.5e-34 151.0 369 34.1
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 6.0e-34 150.2 414 32.4
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.9e-33 147.5 394 32.5
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.9e-33 147.5 394 32.5
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 8.7e-33 146.4 223 39.0
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 9.6e-32 142.9 394 31.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.6e-31 142.1 367 32.2
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.6e-31 142.1 367 32.2
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 2.8e-31 141.4 464 29.5
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.8e-30 138.7 351 33.9
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 2.4e-30 138.3 466 29.0
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.6e-29 134.8 529 28.4
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 4.5e-29 134.0 467 28.7
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 4.5e-29 134.0 467 28.7
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 4.5e-29 134.0 467 28.7
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.6e-26 125.6 203 38.4
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 5.6e-24 117.1 233 34.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.1e-23 115.2 246 32.9
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.4e-22 112.5 101 47.5
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.0e-21 108.6 334 31.1
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.7e-15 87.8 201 33.3
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.1e-14 86.3 250 30.0
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 9.0e-14 83.2 346 28.3
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 9.0e-14 83.2 346 28.3
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 1.2e-13 82.8 391 25.3
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 2.6e-13 81.6 287 25.4
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 5.8e-13 80.5 56 64.3
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.0e-12 79.7 250 29.2
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 6.5e-12 77.0 301 27.9
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 1.9e-11 75.5 198 33.3
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 9.3e-11 73.2 162 30.9
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 1.6e-10 72.4 412 24.5
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.5e-08 65.1 83 34.9
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 2.8e-07 61.6 301 24.6
AL7G16670 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 3.1e-06 58.2 183 30.1
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.1e-06 58.2 97 38.1


User provided reference genes

Program Settings