Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 0.0e+00 1145.6 565 100.0
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 1.1e-248 863.2 566 74.4
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 3.5e-231 805.1 563 70.2
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 4.3e-229 798.1 567 70.7
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.0e-227 791.6 562 68.9
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.6e-226 788.9 558 69.7
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 7.6e-226 787.3 567 69.3
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.9e-224 782.7 582 67.5
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.5e-224 782.3 554 67.3
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 8.7e-222 773.9 563 67.0
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.5e-221 773.1 565 67.6
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.5e-221 772.3 569 68.4
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 4.3e-221 771.5 575 66.6
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 9.6e-221 770.4 590 65.4
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-220 769.6 569 68.4
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 3.1e-219 765.4 559 67.4
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 5.9e-218 761.1 572 64.9
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 7.6e-218 760.8 566 67.5
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 7.6e-218 760.8 573 65.3
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.0e-217 758.1 577 65.2
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 8.5e-217 757.3 585 64.1
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.5e-216 755.7 559 66.4
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 7.2e-216 754.2 562 66.2
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.3e-216 753.8 577 64.3
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 9.3e-216 753.8 567 64.6
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.7e-215 752.3 566 65.9
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 3.6e-215 751.9 544 68.8
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 7.9e-215 750.7 559 64.9
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.3e-214 749.2 577 63.8
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 8.7e-214 747.3 562 65.3
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 3.7e-212 741.9 487 72.3
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 3.7e-212 741.9 546 66.3
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 4.8e-212 741.5 565 64.8
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.3e-212 741.1 596 62.6
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 8.2e-212 740.7 560 65.9
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 8.2e-212 740.7 560 65.9
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 1.5e-210 736.5 563 65.9
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 5.9e-210 734.6 566 65.7
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 5.9e-210 734.6 564 64.9
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.0e-209 733.8 489 72.6
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.7e-209 733.0 564 64.4
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.9e-209 732.3 588 62.9
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 3.8e-209 731.9 563 63.6
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 1.1e-208 730.3 614 60.9
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.5e-208 729.2 558 65.2
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 4.2e-208 728.4 564 64.4
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 4.2e-208 728.4 560 64.5
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 1.2e-207 726.9 565 64.2
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 2.1e-207 726.1 573 62.7
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 3.6e-207 725.3 581 62.8
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.0e-206 723.8 562 64.2
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 5.1e-206 721.5 563 63.2
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.1e-205 720.3 571 62.9
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 2.0e-205 719.5 561 64.5
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 3.7e-204 715.3 561 64.7
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 4.8e-204 714.9 566 63.6
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 6.3e-204 714.5 565 63.2
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 1.1e-203 713.8 460 73.5
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.4e-203 712.6 565 63.5
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 2.4e-203 712.6 537 65.2
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.0e-202 709.5 559 62.3
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.7e-201 706.4 561 64.2
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 1.7e-201 706.4 592 59.8
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.7e-201 706.4 565 63.5
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 6.5e-201 704.5 575 60.9
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.2e-200 701.8 562 63.3
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 5.5e-200 701.4 559 63.1
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.1e-199 699.5 627 58.2
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 6.1e-199 698.0 561 62.7
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.0e-198 697.2 589 59.6
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.1e-197 693.7 577 60.8
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 9.7e-197 690.6 565 61.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.7e-196 689.9 556 63.5
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.7e-196 689.9 581 60.4
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.8e-196 689.1 559 61.7
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.0e-193 680.6 573 60.6
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 5.0e-193 678.3 586 59.4
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.1e-192 677.2 508 66.3
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 3.2e-192 675.6 561 60.6
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.2e-191 673.7 561 60.6
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.4e-190 670.2 539 60.9
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 5.7e-189 664.8 476 66.6
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 5.7e-189 664.8 561 59.9
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 4.5e-186 655.2 566 59.7
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 3.8e-185 652.1 632 55.2
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 5.0e-185 651.7 486 63.8
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.1e-184 650.6 591 57.9
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.3e-182 642.9 560 59.1
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 2.2e-180 636.3 483 64.8
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.2e-178 630.6 478 63.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 5.2e-174 615.1 454 68.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.8e-172 609.4 485 61.9
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.4e-165 585.5 454 65.6
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 5.9e-162 575.1 620 51.8
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.3e-161 573.9 348 77.6
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.3e-161 573.9 366 72.7
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.1e-160 570.9 394 70.8
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 4.3e-160 568.9 591 51.9
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 3.2e-155 552.7 387 67.2
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.6e-154 550.4 387 67.4
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 2.5e-152 543.1 516 55.0
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 8.1e-151 538.1 347 73.2
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.0e-141 506.9 344 70.1
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 1.3e-140 504.2 483 54.2
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 1.7e-140 503.8 551 50.8
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.1e-139 501.1 545 52.1
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.1e-131 474.6 348 67.0
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 8.1e-127 458.4 442 50.2
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 3.2e-123 446.4 401 56.9
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.2e-122 444.5 321 66.0
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.1e-120 438.0 376 60.9
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 4.3e-120 436.0 323 65.6
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 2.6e-117 426.8 302 68.2
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 4.9e-116 422.5 302 67.2
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 8.4e-116 421.8 489 44.4
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 5.1e-113 412.5 319 62.4
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.1e-110 403.3 497 43.5
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.5e-104 383.6 328 59.8
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 6.7e-97 359.0 255 68.2
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.5e-96 357.1 216 77.8
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 3.3e-96 356.7 244 71.7
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.4e-94 350.5 253 66.4
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.1e-80 305.1 498 35.5
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.0e-77 294.3 207 66.2
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.5e-75 287.3 265 56.6
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.4e-64 250.0 245 53.9
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.4e-62 243.0 161 71.4
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 1.6e-61 241.5 146 76.7
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.9e-59 234.6 156 68.6
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.7e-52 211.5 134 72.4
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 2.9e-39 167.5 175 54.9
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.9e-39 166.8 205 47.3
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 3.5e-37 160.6 123 62.6
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.8e-37 159.5 178 51.7
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.7e-36 158.3 180 52.2
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 5.0e-36 156.8 170 53.5
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 5.2e-33 146.7 151 51.7
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.5e-32 145.2 157 55.4
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.5e-32 145.2 163 43.6
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 2.1e-29 134.8 89 75.3
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.3e-28 131.3 150 44.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 8.6e-28 129.4 86 73.3
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-12 78.6 71 52.1
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.9e-12 77.4 125 44.8
CSS0042485 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.3e-07 62.4 115 35.7


User provided reference genes

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