Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 2.3e-171 605.5 311 100.0
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 2.9e-86 322.8 247 71.7
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 7.3e-61 238.4 247 55.1
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 1.2e-60 237.7 275 53.8
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 1.5e-53 214.2 258 48.8
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 1.5e-50 204.1 237 48.1
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 5.8e-50 202.2 242 49.2
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 1.1e-48 198.0 242 48.8
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 4.1e-48 196.1 241 49.4
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 1.3e-46 191.0 248 48.0
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 1.3e-46 191.0 244 47.5
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 3.9e-46 189.5 245 46.9
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 1.2e-44 184.5 236 48.3
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 3.1e-43 179.9 254 42.9
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 6.8e-43 178.7 254 44.9
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 7.6e-42 175.3 236 45.8
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 1.1e-40 171.4 257 44.0
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 5.4e-40 169.1 245 44.9
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 7.1e-40 168.7 247 45.3
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.2e-39 167.9 256 41.8
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 1.3e-38 164.5 256 41.8
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 6.6e-38 162.2 256 41.4
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 4.3e-37 159.5 243 41.2
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 5.6e-37 159.1 245 42.4
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 8.1e-36 155.2 221 43.0
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 2.4e-35 153.7 236 45.3
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 5.2e-35 152.5 238 42.9
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 5.2e-35 152.5 372 32.3
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 6.8e-35 152.1 251 38.6
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 9.9e-34 148.3 249 38.2
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 2.4e-32 143.7 240 41.7
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 7.1e-32 142.1 245 40.8
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 3.5e-31 139.8 249 38.6
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 1.3e-30 137.9 240 39.6
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 1.7e-30 137.5 245 38.8
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 2.3e-30 137.1 244 37.7
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 3.0e-30 136.7 245 37.6
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.5e-29 134.4 214 40.7
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 1.9e-29 134.0 242 39.7
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 2.5e-29 133.7 253 39.9
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 4.3e-29 132.9 246 38.2
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 4.3e-29 132.9 246 40.2
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 2.1e-28 130.6 321 32.4
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 4.8e-28 129.4 265 32.8
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 6.2e-28 129.0 233 37.3
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 6.2e-28 129.0 321 31.8
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 1.4e-27 127.9 235 37.0
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 1.4e-27 127.9 272 37.1
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 1.4e-27 127.9 246 35.8
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 2.4e-27 127.1 225 40.0
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 9.0e-27 125.2 283 32.5
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 2.0e-26 124.0 240 37.1
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 2.0e-26 124.0 249 36.9
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 4.4e-26 122.9 232 35.3
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 4.4e-26 122.9 252 34.5
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 9.9e-26 121.7 258 34.5
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.9e-24 117.5 243 37.0
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 2.4e-24 117.1 244 37.3
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 7.9e-23 112.1 249 34.9
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 3.9e-22 109.8 285 30.2
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 6.6e-22 109.0 247 34.8
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 1.9e-21 107.5 263 33.1
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 5.6e-21 105.9 258 34.5
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 7.3e-21 105.5 244 35.7
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 1.1e-19 101.7 257 35.0
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 9.0e-19 98.6 225 34.7
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 9.9e-18 95.1 230 34.3
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 2.2e-17 94.0 254 31.9
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 2.9e-17 93.6 252 32.1
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 2.9e-17 93.6 252 32.1
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 3.8e-17 93.2 244 30.7
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 3.8e-17 93.2 247 29.6
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 3.2e-16 90.1 228 31.6
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 4.2e-16 89.7 253 30.8
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 7.1e-16 89.0 244 32.4
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 4.3e-13 79.7 225 30.7
FAN15G0678 Fragaria x ananassa HOM05D000722 ORTHO05D000590 5.6e-13 79.3 145 37.9
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 5.6e-13 79.3 246 30.9
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 1.3e-12 78.2 294 25.5
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 3.7e-12 76.6 258 30.2
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 3.7e-12 76.6 238 28.6
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 4.8e-12 76.3 245 29.4
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 1.8e-11 74.3 254 28.7
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 1.8e-11 74.3 232 29.3
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 4.0e-11 73.2 263 30.0
A08p23900 Brassica napus HOM05D011065 ORTHO05D009410 5.3e-11 72.8 256 27.7
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 6.9e-11 72.4 251 27.9
Zm00001eb180650 Zea mays HOM05D000120 ORTHO05D009410 1.2e-10 71.6 247 25.1
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 2.0e-10 70.9 284 30.3
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 2.6e-10 70.5 258 27.5
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 2.6e-10 70.5 258 27.5
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 2.6e-10 70.5 258 27.5
arahy.Tifrunner.gnm1.ann1.T5BQ73 Arachis hypogaea HOM05D000120 ORTHO05D009410 7.6e-10 68.9 81 49.4
BcaC01g00269 Brassica carinata HOM05D011065 ORTHO05D009410 1.7e-09 67.8 250 28.4
C03p77450 Brassica napus HOM05D011065 ORTHO05D009410 1.7e-09 67.8 250 28.4
BolC3t20000H Brassica oleracea HOM05D011065 ORTHO05D009410 1.7e-09 67.8 250 28.4
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 2.9e-09 67.0 266 27.4
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 1.4e-08 64.7 121 33.1
PSO170G1560 Papaver somniferum HOM05D000120 ORTHO05D009410 1.4e-08 64.7 190 28.9
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 2.1e-07 60.8 278 29.5
CDE02G1861 Ceratophyllum demersum HOM05D055785 ORTHO05D043884 2.3e-06 57.4 80 47.5


User provided reference genes

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