Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 1.4e-176 622.9 309 100.0
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 1.6e-156 556.2 305 87.9
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 3.9e-155 551.6 306 87.6
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 5.0e-155 551.2 305 86.9
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 6.6e-155 550.8 301 89.0
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 3.3e-154 548.5 305 85.9
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 4.3e-154 548.1 305 86.2
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 9.5e-154 547.0 305 86.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 1.2e-153 546.6 305 85.9
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.8e-153 545.4 305 85.2
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 4.7e-153 544.7 305 86.6
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 4.7e-153 544.7 305 87.2
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.0e-152 543.5 304 86.8
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.4e-152 543.1 305 87.2
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.1e-152 542.0 314 84.1
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 4.0e-152 541.6 306 84.6
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 5.2e-152 541.2 304 85.9
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.6e-151 538.9 301 86.0
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 3.4e-151 538.5 307 84.0
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.7e-150 536.2 301 85.4
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 4.9e-150 534.6 303 85.1
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 6.4e-150 534.3 308 84.1
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 8.3e-150 533.9 305 84.6
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 9.2e-149 530.4 305 83.9
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 1.2e-148 530.0 305 82.6
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 2.0e-148 529.3 343 77.8
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 7.8e-148 527.3 305 82.6
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.7e-147 526.2 301 85.0
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 2.3e-147 525.8 302 84.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 2.3e-147 525.8 305 83.0
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 6.6e-147 524.2 303 82.2
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 6.6e-147 524.2 303 83.5
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 1.1e-146 523.5 303 84.2
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.1e-146 523.5 311 82.3
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 1.9e-146 522.7 303 83.5
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.9e-146 522.7 306 82.0
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 1.2e-145 520.0 303 82.2
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.1e-145 519.2 323 78.9
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 4.7e-145 518.1 305 81.0
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 4.7e-145 518.1 305 81.6
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 8.0e-145 517.3 305 81.0
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.1e-144 516.9 305 80.7
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-144 516.5 305 81.3
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-144 515.8 303 81.8
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 4.0e-144 515.0 301 83.1
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 4.0e-144 515.0 303 81.2
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 5.2e-144 514.6 303 81.2
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 8.9e-144 513.8 305 80.0
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.2e-143 513.5 303 81.8
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 1.2e-143 513.5 303 82.2
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.5e-143 513.1 303 81.2
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 2.6e-143 512.3 303 81.8
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.6e-143 512.3 305 81.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 2.6e-143 512.3 305 79.7
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 2.6e-143 512.3 303 80.5
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 3.4e-143 511.9 303 80.9
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 3.4e-143 511.9 301 80.7
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 4.4e-143 511.5 303 80.9
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 5.8e-143 511.1 304 80.6
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 9.8e-143 510.4 303 80.9
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 9.8e-143 510.4 303 81.5
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-142 510.0 303 80.9
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.9e-142 508.8 303 80.5
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.9e-142 508.8 303 80.5
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.9e-142 508.8 305 78.7
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 4.9e-142 508.1 306 80.1
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.9e-142 508.1 305 80.0
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.1e-141 506.9 304 79.9
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 3.2e-141 505.4 303 80.9
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 5.4e-141 504.6 303 80.2
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 9.2e-141 503.8 351 73.2
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.6e-140 503.1 305 78.4
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 8.6e-139 497.3 274 89.1
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.5e-138 495.7 339 74.0
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 2.8e-137 492.3 306 77.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.3e-136 489.2 306 77.5
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 5.2e-136 488.0 303 78.5
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 2.0e-135 486.1 303 74.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 2.1e-132 476.1 274 85.0
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 1.1e-128 463.8 304 73.4
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.4e-125 453.4 305 71.8
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.9e-125 453.0 279 77.4
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 1.0e-123 447.2 303 73.6
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.5e-122 443.4 254 85.0
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 8.1e-121 437.6 310 72.3
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.4e-119 431.8 302 66.9
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.4e-119 431.8 302 66.9
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 2.2e-118 429.5 300 68.0
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 3.2e-117 425.6 253 81.0
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 7.1e-117 424.5 302 66.2
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 8.7e-115 417.5 277 73.3
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 2.5e-114 416.0 305 69.5
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.5e-106 389.4 227 83.7
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.3e-105 387.1 280 67.9
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 6.2e-97 358.2 204 85.3
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.4e-93 347.1 305 53.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 4.8e-89 332.0 306 52.3
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.5e-87 327.0 184 85.3
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.2e-84 317.4 226 70.4
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.5e-82 310.5 306 57.2
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.5e-82 310.5 191 81.2
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 3.3e-82 309.3 258 60.1
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 2.4e-80 303.1 309 49.2
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.2e-78 296.6 241 58.9
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 8.5e-70 268.1 203 67.0
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.0e-67 259.2 201 69.7
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.2e-58 231.1 123 84.6
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.2e-58 231.1 123 84.6
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 6.5e-54 215.3 122 78.7
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.9e-53 213.8 122 77.9
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 8.0e-52 208.4 182 63.7
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 6.8e-51 205.3 137 75.9
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 8.9e-43 178.3 102 77.5
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.5e-37 160.2 298 35.9
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.0e-35 154.8 304 30.9
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 3.4e-34 149.8 125 63.2
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 9.8e-34 148.3 144 58.3
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 7.0e-32 142.1 102 68.6
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 1.3e-30 137.9 78 82.1
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 3.3e-29 133.3 117 61.5
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 6.2e-28 129.0 180 43.3
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 6.4e-25 119.0 102 60.8
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.1e-24 118.2 181 43.1
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.1e-23 114.0 145 49.0
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 1.0e-22 111.7 71 67.6
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.1e-19 101.7 180 38.3
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.7e-17 94.4 86 58.1
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.6e-12 77.8 64 60.9
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.4e-11 74.7 45 73.3
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 5.4e-08 62.8 57 56.1
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 4.6e-07 59.7 324 24.4
Duzib093G1615 Durio zibethinus HOM05D000089 ORTHO05D000726 1.0e-06 58.5 324 24.7


User provided reference genes

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