Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 2.6e-124 448.7 229 100.0
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 9.6e-111 403.7 229 88.2
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 9.9e-108 393.7 229 85.2
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 2.9e-107 392.1 229 84.3
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.4e-106 389.8 229 82.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.2e-106 388.7 229 83.0
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 7.1e-106 387.5 229 82.5
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 7.1e-106 387.5 229 82.5
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.2e-105 386.7 228 82.5
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.6e-105 386.3 229 82.1
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 2.7e-105 385.6 229 82.1
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 3.5e-105 385.2 229 83.8
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.0e-105 384.4 229 82.5
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.0e-105 384.4 229 81.2
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 7.9e-105 384.0 229 83.4
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 6.7e-104 380.9 229 82.1
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.5e-103 379.8 229 80.8
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 1.9e-103 379.4 229 79.9
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.3e-103 378.6 229 79.9
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 4.3e-103 378.3 229 80.8
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 5.6e-103 377.9 229 81.2
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 9.6e-103 377.1 229 80.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 9.6e-103 377.1 229 81.7
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.6e-103 377.1 229 81.2
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 9.6e-103 377.1 229 78.6
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 9.6e-103 377.1 229 80.8
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.3e-102 376.7 229 81.2
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 2.8e-102 375.6 229 78.6
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 2.8e-102 375.6 228 78.9
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 6.2e-102 374.4 229 80.3
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 6.2e-102 374.4 229 80.8
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 1.1e-101 373.6 228 80.3
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.4e-101 373.2 228 80.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.4e-101 373.2 229 80.8
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.8e-101 372.9 229 80.8
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.8e-101 372.9 229 78.6
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 2.4e-101 372.5 229 80.3
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.4e-101 372.5 228 81.6
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 3.1e-101 372.1 229 80.3
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 3.1e-101 372.1 229 79.0
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 3.1e-101 372.1 228 78.9
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 4.0e-101 371.7 228 81.1
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 5.3e-101 371.3 215 83.3
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.2e-100 370.2 229 79.9
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.5e-100 369.8 231 78.4
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.5e-100 369.8 231 78.4
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.5e-100 369.8 228 80.3
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 2.0e-100 369.4 229 79.5
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 7.6e-100 367.5 229 78.6
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 7.6e-100 367.5 230 79.1
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.0e-99 367.1 229 77.7
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.0e-99 367.1 229 79.0
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.3e-99 366.7 228 78.1
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 1.7e-99 366.3 228 81.1
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 2.2e-99 365.9 229 78.6
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 3.8e-99 365.2 213 84.0
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 3.8e-99 365.2 229 78.2
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 8.4e-99 364.0 266 71.4
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 8.4e-99 364.0 215 85.1
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.9e-98 362.8 249 74.7
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.9e-98 362.8 229 77.3
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.9e-98 362.8 229 76.9
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.2e-98 362.1 245 74.3
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 5.5e-98 361.3 228 75.9
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.2e-97 360.1 230 80.4
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.6e-97 359.8 213 85.0
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 3.5e-97 358.6 229 75.1
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 2.3e-96 355.9 229 77.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 2.3e-96 355.9 229 76.0
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 3.9e-96 355.1 229 76.9
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 5.1e-96 354.8 213 81.7
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 5.1e-96 354.8 229 76.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.1e-95 353.6 229 73.8
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.1e-95 353.6 215 80.0
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.9e-95 352.8 229 76.9
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 1.9e-95 352.8 229 76.9
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 3.3e-95 352.1 229 74.7
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 7.4e-95 350.9 229 73.4
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 9.7e-95 350.5 229 73.4
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 9.7e-95 350.5 221 81.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.3e-94 350.1 212 81.6
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.6e-94 349.7 229 74.7
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.7e-94 348.6 229 72.9
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 4.8e-94 348.2 229 75.5
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.1e-93 347.1 229 75.1
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-93 346.3 236 72.0
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 3.1e-93 345.5 213 79.8
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 4.1e-93 345.1 229 72.5
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 9.0e-93 344.0 212 80.2
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-92 343.6 228 72.8
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.5e-92 343.2 213 79.3
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.5e-92 343.2 229 74.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.5e-92 343.2 229 72.5
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 2.6e-92 342.4 231 74.0
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.2e-91 339.3 229 71.6
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.2e-91 339.3 229 75.5
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.9e-91 339.0 263 65.8
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.9e-91 339.0 299 62.9
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.5e-91 337.8 247 68.8
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 8.5e-91 337.4 229 70.3
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.1e-90 337.0 228 71.1
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 3.2e-90 335.5 241 68.9
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 4.2e-90 335.1 242 68.6
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 5.5e-90 334.7 228 72.4
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 5.5e-90 334.7 228 71.9
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 5.5e-90 334.7 228 71.9
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.4e-90 334.0 228 71.1
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 6.1e-89 331.3 228 70.6
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 7.9e-89 330.9 228 70.6
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 3.9e-88 328.6 198 78.3
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 5.1e-88 328.2 229 74.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.1e-87 327.0 228 70.6
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 2.5e-87 325.9 228 69.7
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 3.3e-87 325.5 228 68.4
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 4.3e-87 325.1 228 69.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 4.3e-87 325.1 228 69.7
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-86 323.6 228 69.3
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.1e-85 320.5 229 71.2
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.8e-85 319.7 228 68.4
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.2e-84 317.0 230 68.7
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 3.4e-84 315.5 229 67.2
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 4.5e-84 315.1 229 69.9
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.1e-82 310.5 228 67.1
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.1e-81 306.2 229 69.9
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 7.9e-81 304.3 226 68.6
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.4e-80 303.5 204 72.5
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.0e-80 302.4 206 73.3
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.1e-79 300.4 227 67.4
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.5e-79 300.1 184 83.2
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.6e-79 299.3 298 55.0
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.3e-78 297.0 186 79.0
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 3.7e-78 295.4 228 64.0
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.5e-76 288.9 196 78.1
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 4.5e-76 288.5 221 62.9
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.5e-75 284.6 228 61.4
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 7.2e-74 281.2 163 82.2
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 3.3e-71 272.3 232 61.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.4e-71 271.2 229 60.3
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 8.2e-70 267.7 229 59.0
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.7e-68 261.2 229 58.1
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 5.5e-66 255.0 246 53.7
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 2.0e-63 246.5 227 55.1
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.3e-62 243.8 229 56.3
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.4e-61 240.4 163 67.5
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.1e-61 238.8 147 83.0
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.3e-61 238.4 207 64.3
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 7.0e-61 238.0 228 52.2
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 7.7e-60 234.6 162 69.8
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.0e-59 234.2 133 81.2
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.2e-56 221.9 194 62.9
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.6e-52 210.3 228 48.2
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 2.3e-51 206.5 228 48.7
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.1e-49 198.4 166 65.1
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.6e-44 183.7 122 78.7
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.0e-43 181.0 104 79.8
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 8.9e-40 167.9 103 83.5
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.9e-37 160.2 100 84.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.0e-35 154.5 148 59.5
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.2e-31 141.0 84 86.9
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 2.9e-30 136.3 119 60.5
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 2.9e-30 136.3 119 60.5
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 7.3e-26 121.7 188 41.0
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.1e-24 116.3 66 81.8
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 5.8e-23 112.1 82 69.5
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 8.3e-22 108.2 160 40.0
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 6.0e-20 102.1 66 68.2
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.2e-17 92.0 140 41.4
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.4e-16 90.1 84 58.3
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.4e-16 90.1 68 67.6
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-15 87.4 64 70.3
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.3e-14 84.3 99 47.5
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.1e-08 63.2 45 55.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 4.4e-07 59.3 35 82.9
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 4.4e-07 59.3 123 39.0
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 7.6e-07 58.5 181 26.5


User provided reference genes

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