Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 5.3e-204 714.1 363 100.0
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 1.2e-152 543.5 362 75.7
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.2e-150 537.0 362 74.6
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.1e-144 516.2 364 71.2
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.0e-142 509.6 364 69.5
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 1.2e-134 483.8 368 66.3
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 3.4e-134 482.3 364 68.4
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 8.3e-133 477.6 364 65.9
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 8.3e-133 477.6 365 65.8
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.0e-130 469.2 365 64.1
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 3.3e-129 465.7 367 65.7
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 7.3e-129 464.5 365 63.6
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 1.6e-128 463.4 361 64.5
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 2.8e-128 462.6 339 68.4
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 6.2e-128 461.5 364 64.3
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 6.8e-127 458.0 360 64.4
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-126 457.2 365 62.7
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 2.6e-126 456.1 342 66.7
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.7e-125 452.2 363 62.0
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 8.3e-125 451.1 393 61.6
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 1.4e-124 450.3 363 63.9
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 3.2e-124 449.1 285 75.4
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 7.0e-124 448.0 365 63.3
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.1e-123 446.4 366 62.3
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.5e-121 440.3 363 60.9
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 1.9e-121 439.9 365 64.4
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 2.5e-121 439.5 367 62.1
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 4.3e-121 438.7 364 60.7
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 5.6e-121 438.3 337 63.8
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.1e-120 436.4 337 63.8
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 2.8e-120 436.0 365 63.3
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.1e-119 434.1 362 61.6
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 3.1e-119 432.6 285 73.0
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 8.9e-119 431.0 372 58.6
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 3.4e-118 429.1 366 59.0
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 4.4e-118 428.7 369 62.6
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 4.4e-118 428.7 366 62.0
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 4.4e-118 428.7 366 59.0
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 2.9e-117 426.0 365 62.2
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 2.4e-116 422.9 310 69.0
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 7.1e-116 421.4 368 62.5
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 9.2e-116 421.0 366 59.8
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 1.6e-115 420.2 363 61.4
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.6e-115 420.2 366 61.2
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.5e-115 419.1 371 58.5
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.3e-114 417.2 362 59.1
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.1e-113 414.1 362 56.9
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.9e-113 413.3 412 55.1
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.2e-112 410.6 354 61.3
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.6e-112 410.2 362 59.4
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.1e-111 407.5 361 59.3
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 2.4e-111 406.4 364 55.8
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 8.9e-111 404.4 360 58.9
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.5e-110 403.7 395 54.4
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.0e-110 403.3 361 56.2
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 3.4e-110 402.5 360 58.9
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 5.8e-110 401.7 362 56.1
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 9.9e-110 401.0 361 57.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 6.4e-109 398.3 289 66.8
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 5.4e-108 395.2 382 55.0
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 2.1e-107 393.3 363 57.3
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 3.9e-106 389.0 262 69.8
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 5.1e-106 388.7 295 64.7
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.1e-103 380.9 295 63.1
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.8e-103 380.2 360 56.4
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 9.0e-103 377.9 361 54.6
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.2e-102 377.5 361 54.8
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 1.2e-102 377.5 360 55.8
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 4.4e-102 375.6 361 54.3
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 5.8e-102 375.2 361 54.3
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 5.8e-102 375.2 361 54.6
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 1.7e-101 373.6 364 53.6
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 4.9e-101 372.1 389 53.0
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 6.4e-101 371.7 373 53.6
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 9.3e-100 367.9 374 53.2
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.2e-99 367.5 339 58.1
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 3.5e-99 365.9 363 51.5
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 4.6e-99 365.5 364 52.2
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 6.0e-99 365.2 368 54.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 6.6e-98 361.7 365 52.9
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.5e-97 359.8 285 64.2
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 7.3e-97 358.2 365 50.7
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 3.6e-96 355.9 337 56.7
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 1.2e-94 350.9 369 54.7
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 3.5e-91 339.3 366 51.9
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 1.5e-89 334.0 365 51.2
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 4.3e-89 332.4 363 50.7
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 9.6e-89 331.3 361 50.4
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 1.3e-88 330.9 364 51.6
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 6.7e-82 308.5 370 47.0
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.9e-81 307.0 331 49.8
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 7.4e-81 305.1 199 70.9
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 1.2e-78 297.7 369 48.2
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.2e-77 293.5 363 46.0
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 9.3e-76 288.1 189 71.4
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.9e-75 285.0 194 68.0
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 9.7e-73 278.1 262 50.4
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 8.5e-69 265.0 189 63.0
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.2e-64 250.4 167 67.1
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.0e-58 231.5 367 37.3
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 1.2e-54 218.0 304 41.1
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.3e-53 214.5 301 38.5
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 2.9e-45 186.8 264 40.5
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 3.2e-44 183.3 175 57.1
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-42 178.3 128 68.0
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.7e-41 172.6 128 66.4
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 9.7e-41 171.8 220 47.3
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-40 170.2 111 69.4
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-39 168.3 111 68.5
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 9.1e-39 165.2 132 59.8
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.7e-38 163.7 128 63.3
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.4e-31 141.4 127 55.9
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 3.3e-28 130.2 181 38.1
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 1.2e-27 128.3 162 45.1
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 2.3e-26 124.0 218 36.2
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.3e-24 115.9 146 46.6
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-22 111.3 79 67.1
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.3e-20 103.6 77 59.7
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-19 100.5 69 65.2
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 3.6e-19 100.1 213 30.5
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 8.0e-19 99.0 303 26.7
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.5e-17 94.7 61 68.9
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.9e-16 90.5 131 42.7
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 4.6e-14 83.2 78 51.3
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 1.2e-09 68.6 46 67.4
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 1.2e-09 68.6 52 61.5


User provided reference genes

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