Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 8.7e-75 283.5 138 100.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 2.8e-41 172.2 139 65.5
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 2.0e-39 166.0 140 61.4
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 7.7e-39 164.1 120 65.8
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 2.3e-35 152.5 109 67.0
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 9.8e-34 147.1 125 57.6
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.3e-33 146.7 127 55.9
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 3.7e-33 145.2 127 55.9
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.9e-33 144.8 122 58.2
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.4e-32 142.5 125 58.4
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 7.0e-32 141.0 134 56.0
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 7.0e-32 141.0 122 57.4
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 1.6e-31 139.8 135 56.3
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 2.0e-31 139.4 116 62.9
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 4.5e-31 138.3 130 59.2
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 5.0e-30 134.8 148 54.1
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.0e-26 122.9 120 54.2
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 5.7e-26 121.3 131 58.8
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 9.8e-26 120.6 166 48.2
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.3e-25 120.2 157 46.5
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 8.3e-25 117.5 119 54.6
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.3e-25 117.5 119 54.6
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.4e-24 116.7 145 48.3
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.4e-24 116.7 157 45.9
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 3.2e-24 115.5 138 47.1
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 3.2e-24 115.5 129 51.2
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 4.1e-24 115.2 157 45.2
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 4.1e-24 115.2 145 47.6
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 4.6e-23 111.7 128 53.9
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 3.3e-21 105.5 142 47.9
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 7.3e-21 104.4 130 47.7
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 7.3e-21 104.4 133 48.9
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 1.2e-20 103.6 131 49.6
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 5.8e-18 94.7 138 42.8
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 2.9e-17 92.4 133 45.9
Gohir.A01G170700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 8.3e-17 90.9 126 44.4
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 7.8e-15 84.3 103 47.6
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.3e-14 83.6 117 46.2
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 2.3e-14 82.8 94 53.2
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 6.6e-14 81.3 131 39.7
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 1.9e-13 79.7 87 47.1
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 1.9e-13 79.7 114 46.5
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 5.6e-13 78.2 126 39.7
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 7.3e-13 77.8 106 46.2
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 7.3e-13 77.8 105 43.8
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 7.3e-13 77.8 108 47.2
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.1e-12 76.3 115 40.9
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 3.6e-12 75.5 104 46.2
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.6e-12 75.5 108 42.6
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 3.6e-12 75.5 105 44.8
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 1.4e-11 73.6 112 47.3
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 1.4e-11 73.6 99 43.4
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 2.3e-11 72.8 80 52.5
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 3.1e-11 72.4 141 37.6
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 4.0e-11 72.0 89 50.6
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 5.2e-11 71.6 108 41.7
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.2e-10 70.5 91 47.3
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 1.5e-10 70.1 130 42.3
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 1.5e-10 70.1 105 41.9
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 4.4e-10 68.6 102 42.2
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 4.4e-10 68.6 105 41.9
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 1.3e-09 67.0 93 46.2
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.3e-09 67.0 81 43.2
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 2.2e-09 66.2 90 45.6
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 2.9e-09 65.9 106 40.6
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.7e-09 65.5 131 39.7
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.7e-09 65.5 75 46.7
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 3.7e-09 65.5 114 41.2
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 4.9e-09 65.1 96 47.9
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.4e-09 64.7 93 47.3
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 6.4e-09 64.7 69 47.8
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 8.3e-09 64.3 99 41.4
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 1.4e-08 63.5 64 53.1
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.4e-08 62.8 77 51.9
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 2.4e-08 62.8 114 38.6
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 3.2e-08 62.4 61 59.0
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.2e-08 62.4 72 47.2
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 3.2e-08 62.4 76 43.4
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 3.2e-08 62.4 114 35.1
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.2e-08 62.4 95 41.1
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.1e-08 62.0 77 46.8
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 5.4e-08 61.6 103 41.7
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 5.4e-08 61.6 85 45.9
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 7.1e-08 61.2 78 44.9
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 7.1e-08 61.2 132 40.2
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.2e-07 60.5 77 45.5
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.2e-07 60.5 95 49.5
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.2e-07 60.5 86 44.2
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.2e-07 60.5 86 45.3
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.6e-07 60.1 95 49.5
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 1.6e-07 60.1 89 44.9
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.6e-07 60.1 112 38.4
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 2.1e-07 59.7 65 53.8
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.1e-07 59.7 75 46.7
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 2.7e-07 59.3 110 36.4
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 3.5e-07 58.9 89 44.9
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.5e-07 58.9 72 45.8
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 3.5e-07 58.9 75 42.7
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 7.8e-07 57.8 76 47.4
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 7.8e-07 57.8 73 45.2
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 1.0e-06 57.4 88 43.2
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 1.0e-06 57.4 106 36.8
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.0e-06 57.4 100 36.0
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.0e-06 57.4 97 41.2
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.3e-06 57.0 72 48.6
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.3e-06 57.0 113 36.3
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.3e-06 57.0 75 46.7
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.7e-06 56.6 89 42.7
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.7e-06 56.6 113 38.9
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.7e-06 56.6 85 50.6
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-06 56.6 85 50.6
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.7e-06 56.6 107 43.9
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.7e-06 56.6 55 65.5
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 2.3e-06 56.2 98 38.8
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 3.0e-06 55.8 80 42.5
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 3.0e-06 55.8 84 40.5
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 3.0e-06 55.8 58 53.4
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 3.9e-06 55.5 101 40.6
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 3.9e-06 55.5 90 43.3
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 5.1e-06 55.1 66 48.5
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 5.1e-06 55.1 72 44.4
Sp4g00090 Schrenkiella parvula HOM05D007970 ORTHO05D009943 5.1e-06 55.1 52 53.8
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 5.1e-06 55.1 72 52.8
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 6.6e-06 54.7 79 45.6
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 6.6e-06 54.7 89 42.7
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 6.6e-06 54.7 97 37.1
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 6.6e-06 54.7 70 51.4
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 6.6e-06 54.7 106 34.0
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 8.6e-06 54.3 98 39.8
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 8.6e-06 54.3 61 50.8


User provided reference genes

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