Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G070500 Manihot esculenta HOM05D008303 ORTHO05D010386 2.6e-60 235.3 129 100.0
Manes.04G070400 Manihot esculenta HOM05D008303 ORTHO05D010386 3.8e-56 221.5 132 94.7
Potri.009G138700 Populus trichocarpa HOM05D008303 ORTHO05D010386 1.3e-32 143.3 128 69.5
Potri.004G178500 Populus trichocarpa HOM05D008303 ORTHO05D010386 3.8e-32 141.7 128 69.5
Sabra04G0120100 Salix brachista HOM05D008303 ORTHO05D010386 4.0e-29 131.7 127 64.6
Thecc.02G054500 Theobroma cacao HOM05D008303 ORTHO05D010386 4.0e-29 131.7 121 63.6
COL.COLO4_36725 Corchorus olitorius HOM05D008303 ORTHO05D010386 6.3e-27 124.4 122 59.8
COL.COLO4_36726 Corchorus olitorius HOM05D008303 ORTHO05D010386 1.4e-26 123.2 122 62.3
Sabra09G0107400 Salix brachista HOM05D008303 ORTHO05D010386 3.5e-25 118.6 125 61.6
QL11p052465 Quercus lobata HOM05D008303 ORTHO05D010386 1.5e-23 113.2 120 55.8
Gorai.002G200800 Gossypium raimondii HOM05D008303 ORTHO05D010386 1.6e-22 109.8 126 54.8
Gohir.D01G161900 Gossypium hirsutum HOM05D008303 ORTHO05D010386 2.3e-21 105.9 128 53.9
Gorai.005G255400 Gossypium raimondii HOM05D008303 ORTHO05D010386 2.3e-21 105.9 133 54.9
Rhsim11G0193900 Rhododendron simsii HOM05D008303 ORTHO05D010386 4.0e-21 105.1 129 53.5
Aqoxy5G01096 Aquilegia oxysepala HOM05D008303 ORTHO05D010386 5.2e-21 104.8 130 54.6
Gohir.A03G206100 Gossypium hirsutum HOM05D008303 ORTHO05D010386 5.2e-21 104.8 133 54.1
Gohir.D02G227500 Gossypium hirsutum HOM05D008303 ORTHO05D010386 8.9e-21 104.0 133 52.6
Ciclev10030089m.g Citrus clementina HOM05D008303 ORTHO05D010386 2.0e-20 102.8 140 47.1
Cfa005292 Carpinus fangiana HOM05D008303 ORTHO05D010386 3.4e-20 102.1 135 48.9
Haze_02095 Corylus avellana HOM05D008303 ORTHO05D010386 7.5e-20 100.9 134 50.7
Gohir.A01G170900 Gossypium hirsutum HOM05D008303 ORTHO05D010386 2.2e-19 99.4 129 52.7
Oeu015521.1 Olea europaea HOM05D008303 ORTHO05D010386 3.7e-19 98.6 129 49.6
Migut.B00055 Erythranthe guttata HOM05D008303 ORTHO05D010386 1.6e-17 93.2 128 46.9
QL11p052446 Quercus lobata HOM05D008303 ORTHO05D010386 2.7e-17 92.4 107 50.5
Dinv14130 Davidia involucrata HOM05D001535 ORTHO05D003710 1.7e-16 89.7 93 59.1
Prupe.8G169600 Prunus persica HOM05D008303 ORTHO05D010386 1.7e-16 89.7 81 65.4
Nn6g31905 Nelumbo nucifera HOM05D008303 ORTHO05D010386 8.6e-16 87.4 141 41.8
Sed0009685 Sechium edule HOM05D008303 ORTHO05D010386 1.6e-14 83.2 123 49.6
Cpa.g.sc20.118 Carica papaya HOM05D008303 ORTHO05D010386 2.1e-14 82.8 149 47.7
Atru.chr5.3448 Acer truncatum HOM05D008303 ORTHO05D010386 2.8e-14 82.4 165 41.8
EL10Ac9g21335 Beta vulgaris HOM05D008303 ORTHO05D010386 3.1e-13 79.0 130 45.4
ClCG02G003900 Citrullus lanatus HOM05D008303 ORTHO05D010386 6.8e-13 77.8 127 47.2
Sopen01g053870 Solanum pennellii HOM05D008303 ORTHO05D010386 1.2e-12 77.0 136 37.5
Ciclev10030098m.g Citrus clementina HOM05D008303 ORTHO05D010386 1.5e-12 76.6 87 52.9
CiPaw.06G120000 Carya illinoinensis HOM05D008303 ORTHO05D010386 3.4e-12 75.5 141 45.4
CsaV3_7G001230 Cucumis sativus L. HOM05D008303 ORTHO05D010386 4.4e-12 75.1 126 47.6
Nitab4.5_0004867g0100 Nicotiana tabacum HOM05D008303 ORTHO05D010386 1.3e-11 73.6 134 41.0
MELO3C013332.2 Cucumis melo HOM05D008303 ORTHO05D010386 1.7e-11 73.2 128 46.9
Migut.N01334 Erythranthe guttata HOM05D008303 ORTHO05D010386 2.2e-11 72.8 124 41.1
Sc18g0006250 Simmondsia chinensis HOM05D008303 ORTHO05D010386 3.7e-11 72.0 134 41.0
arahy.Tifrunner.gnm1.ann1.DC2STY Arachis hypogaea HOM05D008303 ORTHO05D010386 1.4e-10 70.1 106 46.2
MSTRG.5463 Avicennia marina HOM05D008303 ORTHO05D010386 3.2e-10 68.9 120 41.7
Ah.01g023280 Amaranthus hybridus HOM05D008303 ORTHO05D010386 5.4e-10 68.2 130 42.3
Glyma.10G283700 Glycine max HOM05D008303 ORTHO05D010386 1.6e-09 66.6 130 40.8
Glyma.20G106100 Glycine max HOM05D008303 ORTHO05D010386 1.3e-08 63.5 125 40.8
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 1.7e-08 63.2 127 37.8
FAN24G2158 Fragaria x ananassa HOM05D014143 ORTHO05D016307 2.3e-08 62.8 134 36.6
PGSC0003DMG400018640 Solanum tuberosum HOM05D008303 ORTHO05D010386 2.3e-08 62.8 76 48.7
SGA_v2.0_scaffold58G20342 Striga asiatica HOM05D008303 ORTHO05D010386 5.0e-08 61.6 132 37.1
VMungo0720G2805 Vigna mungo HOM05D008303 ORTHO05D010386 5.0e-08 61.6 99 42.4
FvH4_2g15720 Fragaria vesca HOM05D014143 ORTHO05D016307 2.5e-07 59.3 134 35.8
AUR62012998 Chenopodium quinoa HOM05D008303 ORTHO05D010386 2.1e-06 56.2 134 35.1
Nitab4.5_0009111g0020 Nicotiana tabacum HOM05D008303 ORTHO05D010386 2.8e-06 55.8 136 36.8
AUR62010007 Chenopodium quinoa HOM05D008303 ORTHO05D010386 8.1e-06 54.3 136 33.8


User provided reference genes

Program Settings