Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 2.8e-172 608.6 328 100.0
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.7e-167 592.0 328 97.3
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 2.6e-125 452.6 325 70.8
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 3.5e-122 442.2 326 67.2
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.3e-121 439.5 324 66.0
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.5e-120 436.8 324 65.7
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 1.9e-120 436.4 326 66.9
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.1e-119 433.0 328 72.9
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 6.2e-119 431.4 322 66.1
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 8.1e-119 431.0 335 63.9
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 2.0e-117 426.4 326 66.0
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 4.4e-117 425.2 320 66.9
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 2.2e-116 422.9 319 66.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.4e-115 419.5 330 64.5
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 3.2e-115 419.1 352 67.3
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.2e-114 417.2 323 63.8
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.6e-114 416.8 323 66.6
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.7e-114 416.0 329 62.9
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 3.5e-114 415.6 323 64.1
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.7e-113 413.3 316 64.2
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 3.0e-113 412.5 328 63.1
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 3.3e-112 409.1 329 63.8
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 9.9e-109 397.5 328 60.4
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 1.3e-108 397.1 322 66.5
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.7e-108 396.7 320 62.8
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.7e-108 396.7 328 60.4
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 2.2e-108 396.4 319 60.5
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 3.7e-108 395.6 320 60.6
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 4.9e-108 395.2 345 58.8
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.4e-107 393.7 319 62.7
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.4e-107 393.7 339 58.7
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.9e-107 393.3 292 68.2
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 3.2e-107 392.5 325 60.3
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 3.2e-107 392.5 327 60.9
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 1.6e-106 390.2 317 61.8
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 4.6e-106 388.7 323 60.7
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 7.8e-106 387.9 323 60.4
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 1.0e-105 387.5 319 63.9
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.3e-105 387.1 317 63.1
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 1.7e-105 386.7 324 60.2
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 1.7e-105 386.7 323 60.1
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 2.3e-105 386.3 323 59.4
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 3.0e-105 386.0 329 60.8
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-104 384.0 323 59.4
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.9e-104 383.3 323 60.4
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 2.5e-104 382.9 328 61.0
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 3.3e-104 382.5 299 64.9
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 3.3e-104 382.5 321 60.1
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 5.6e-104 381.7 323 59.1
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 7.3e-104 381.3 339 57.5
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.6e-103 380.2 324 61.4
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.6e-103 380.2 324 59.0
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 2.1e-103 379.8 324 59.3
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 4.7e-103 378.6 322 60.2
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 6.2e-103 378.3 324 59.0
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 8.1e-103 377.9 327 57.5
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.8e-102 376.7 338 56.8
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 4.0e-102 375.6 323 60.4
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 4.0e-102 375.6 332 58.1
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 6.8e-102 374.8 323 58.2
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 8.9e-102 374.4 330 58.5
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.2e-101 374.0 323 59.4
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 2.0e-101 373.2 323 61.6
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 9.9e-101 370.9 322 56.8
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 2.4e-99 366.3 322 56.5
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 7.1e-99 364.8 322 58.7
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 7.1e-99 364.8 322 56.2
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.6e-98 363.6 314 64.6
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 2.1e-98 363.2 373 52.3
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 3.5e-98 362.5 331 56.2
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 4.6e-98 362.1 329 58.1
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 6.6e-97 358.2 293 62.5
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 6.6e-97 358.2 320 57.2
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 8.7e-97 357.8 322 57.8
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 2.5e-96 356.3 333 54.7
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 2.5e-96 356.3 328 55.8
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 3.3e-96 355.9 328 57.3
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 4.3e-96 355.5 325 57.5
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 2.1e-95 353.2 323 59.1
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 6.2e-95 351.7 317 55.5
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 8.1e-95 351.3 324 56.8
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-94 350.9 323 56.7
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 1.1e-94 350.9 323 56.7
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 4.0e-94 349.0 324 58.3
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 6.9e-94 348.2 331 56.8
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 2.0e-93 346.7 324 51.9
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 3.4e-93 345.9 314 57.0
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 3.4e-93 345.9 314 57.0
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 7.6e-93 344.7 324 55.6
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.7e-92 343.6 275 63.6
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 2.9e-92 342.8 326 58.6
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 3.8e-92 342.4 232 69.4
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 6.4e-92 341.7 370 50.5
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 8.4e-92 341.3 326 58.3
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 3.2e-91 339.3 327 51.4
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 1.6e-90 337.0 281 60.1
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 3.0e-89 332.8 245 64.1
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.1e-88 330.9 318 56.3
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 2.5e-88 329.7 319 52.7
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.8e-86 323.6 329 52.3
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 3.1e-86 322.8 318 50.3
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 2.0e-85 320.1 318 54.4
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 1.7e-84 317.0 331 50.2
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 2.2e-84 316.6 317 49.5
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 2.9e-84 316.2 329 54.4
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 4.6e-82 308.9 328 54.0
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 6.0e-82 308.5 319 50.2
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 1.3e-81 307.4 329 55.6
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 6.7e-81 305.1 334 56.6
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 6.7e-81 305.1 318 53.5
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 6.7e-81 305.1 327 52.3
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 6.7e-81 305.1 320 53.4
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 8.7e-81 304.7 318 52.2
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 1.3e-79 300.8 318 52.2
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 3.7e-79 299.3 321 48.6
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 3.1e-78 296.2 318 52.2
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 2.6e-77 293.1 313 54.3
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 4.5e-77 292.4 329 51.7
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 1.3e-76 290.8 323 50.8
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.1e-75 285.0 333 50.8
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.6e-74 283.9 328 47.6
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 4.6e-74 282.3 329 51.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.5e-72 277.3 478 36.4
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 6.9e-70 268.5 334 47.0
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 5.0e-68 262.3 193 65.3
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 2.5e-64 250.0 223 61.0
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 4.1e-62 242.7 215 54.4
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.9e-60 236.5 280 48.2
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 1.1e-56 224.6 323 40.2
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 5.7e-56 222.2 210 54.3
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 4.1e-54 216.1 324 38.0
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 5.3e-54 215.7 324 36.1
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 5.9e-53 212.2 315 43.5
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 1.1e-51 208.0 298 43.6
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 5.2e-49 199.1 182 53.8
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 5.3e-46 189.1 141 62.4
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 5.9e-45 185.7 262 45.4
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 2.7e-42 176.8 318 32.1
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 2.3e-41 173.7 335 38.5
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.2e-39 167.2 113 74.3
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 5.5e-35 152.5 227 47.6
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.2e-32 144.8 171 59.6
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 1.4e-30 137.9 118 56.8
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.0e-25 121.7 79 74.7
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 1.1e-22 111.7 157 40.1
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 4.1e-22 109.8 121 50.4
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-20 102.8 188 33.5
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 6.6e-20 102.4 247 32.8
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.6e-19 99.4 119 52.1
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 4.0e-17 93.2 115 55.7
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 2.2e-15 87.4 117 46.2
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 1.8e-14 84.3 206 30.6
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 7.3e-11 72.4 111 42.3
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.2e-10 71.6 234 28.6
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.2e-08 65.1 178 28.7
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 3.7e-07 60.1 48 52.1
Cre03.g177900 Chlamydomonas reinhardtii HOM05D004681 ORTHO05D005541 8.3e-07 58.9 227 24.7
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.4e-06 58.2 52 53.8


User provided reference genes

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