Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 4.3e-127 458.0 228 100.0
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.0e-104 383.6 226 81.9
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.7e-104 382.9 226 81.9
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.3e-104 382.5 226 81.4
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.1e-104 381.3 226 80.5
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.1e-104 381.3 223 83.9
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 3.3e-103 378.6 226 83.6
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.2e-102 374.4 226 79.2
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.4e-101 372.5 226 78.3
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.4e-101 372.5 227 78.9
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.9e-101 370.9 226 79.6
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.0e-101 370.5 226 79.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.5e-100 369.8 227 79.7
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-100 369.4 226 77.4
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.6e-100 369.0 226 79.6
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 4.5e-100 368.2 226 78.3
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 4.5e-100 368.2 227 80.6
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 5.8e-100 367.9 226 78.8
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 7.6e-100 367.5 225 78.7
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 7.6e-100 367.5 225 78.7
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 3.8e-99 365.2 226 76.5
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 3.8e-99 365.2 226 78.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 6.4e-99 364.4 228 75.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.1e-98 363.6 226 77.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-98 363.6 227 75.3
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-98 363.2 228 76.3
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 3.2e-98 362.1 228 74.6
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.2e-98 361.7 226 76.1
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 4.2e-98 361.7 226 76.5
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 4.2e-98 361.7 226 77.0
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 5.4e-98 361.3 226 75.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.4e-98 361.3 226 75.2
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.2e-97 360.1 226 75.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-97 359.8 226 77.0
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.6e-97 359.8 226 75.7
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-97 359.4 226 74.8
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.1e-97 359.4 228 74.1
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 3.5e-97 358.6 228 72.8
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.6e-97 358.2 226 75.2
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.6e-97 358.2 226 75.2
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 7.9e-97 357.5 226 74.8
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.0e-96 357.1 228 72.8
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.0e-96 357.1 220 80.0
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.3e-96 356.7 226 77.4
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.3e-96 356.7 228 72.8
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.3e-96 356.7 228 72.4
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.8e-96 356.3 225 76.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.8e-96 356.3 222 75.7
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.8e-96 356.3 226 73.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.3e-96 355.9 226 77.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.3e-96 355.9 226 74.8
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 3.9e-96 355.1 223 75.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 3.9e-96 355.1 226 77.9
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 3.9e-96 355.1 226 74.3
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 5.1e-96 354.8 226 74.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.5e-95 352.4 223 74.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.5e-95 352.4 226 74.3
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.3e-95 351.7 222 74.8
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 4.3e-95 351.7 226 74.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 5.6e-95 351.3 228 74.6
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 7.4e-95 350.9 222 73.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 7.4e-95 350.9 228 73.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 77.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 7.4e-95 350.9 224 78.1
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.1e-94 349.4 217 75.1
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.1e-94 349.4 219 78.1
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.8e-94 349.0 225 74.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 6.2e-94 347.8 240 73.8
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 6.2e-94 347.8 229 76.0
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.1e-93 347.1 217 77.9
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.1e-93 347.1 225 74.7
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.1e-93 347.1 225 74.7
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 225 74.7
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 3.1e-93 345.5 222 73.4
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-93 345.1 222 73.4
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 5.3e-93 344.7 225 73.8
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 6.9e-93 344.4 226 74.3
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 9.0e-93 344.0 225 73.8
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 1.5e-92 343.2 222 73.0
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.5e-92 343.2 215 76.3
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.0e-92 342.8 225 74.2
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.6e-92 342.4 224 75.0
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 3.4e-92 342.0 226 73.5
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.0e-91 340.5 222 73.9
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 1.3e-91 340.1 232 72.4
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.7e-91 339.7 226 74.3
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.7e-91 339.7 224 74.6
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.7e-91 339.7 224 74.1
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.7e-91 339.7 226 72.6
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.2e-91 339.3 226 74.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 2.2e-91 339.3 224 74.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.2e-91 339.3 226 72.6
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.9e-91 339.0 225 73.3
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.9e-90 336.3 226 73.5
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 2.5e-90 335.9 225 72.4
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 2.5e-90 335.9 225 72.4
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.2e-90 335.5 226 73.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 3.2e-90 335.5 225 72.4
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.2e-90 335.5 206 75.2
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 7.1e-90 334.3 224 71.9
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 9.3e-90 334.0 247 70.4
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.2e-89 333.6 224 72.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 4.6e-89 331.6 224 70.5
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 4.6e-89 331.6 216 76.9
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 7.9e-89 330.9 218 73.4
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-88 329.7 201 78.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 3.0e-88 328.9 229 72.1
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 5.1e-88 328.2 206 74.8
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 8.7e-88 327.4 203 76.4
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.9e-87 326.2 230 71.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.3e-87 325.5 262 63.7
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 4.3e-87 325.1 208 72.6
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.1e-86 322.8 224 71.9
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 8.2e-86 320.9 203 73.9
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-85 320.5 209 73.7
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.1e-85 320.5 209 73.7
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.4e-85 320.1 210 69.5
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 1.2e-84 317.0 215 71.6
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 2.0e-84 316.2 204 74.5
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.2e-83 312.8 208 72.1
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.9e-82 309.7 209 71.8
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 4.2e-82 308.5 211 71.1
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.5e-81 305.4 203 72.9
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.6e-81 305.1 226 66.4
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 9.7e-79 297.4 202 68.8
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.2e-76 290.4 198 71.7
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.5e-76 288.5 195 73.3
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 5.9e-76 288.1 211 63.5
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 7.7e-76 287.7 186 75.3
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.7e-75 286.6 223 67.7
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 8.5e-75 284.3 213 62.9
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.2e-74 282.0 227 63.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-72 276.9 215 66.0
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.9e-72 275.4 177 74.6
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 8.8e-72 274.2 214 63.1
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.5e-71 272.7 221 63.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 7.4e-71 271.2 227 63.0
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 3.4e-68 262.3 214 62.6
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 6.5e-67 258.1 225 59.1
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.4e-66 256.9 160 76.2
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 9.4e-66 254.2 231 59.3
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 3.6e-65 252.3 161 76.4
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.6e-65 252.3 203 63.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 3.0e-64 249.2 150 84.0
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.0e-64 249.2 223 61.0
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 6.3e-62 241.5 196 62.2
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 2.6e-60 236.1 214 55.6
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 7.7e-60 234.6 213 55.4
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.5e-59 231.5 221 55.2
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.2e-58 228.8 226 56.2
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 4.7e-57 225.3 216 54.2
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.9e-56 222.2 182 64.3
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.2e-56 221.9 186 63.4
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 1.5e-55 220.3 217 53.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.7e-51 206.8 216 50.9
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 3.8e-43 179.1 117 76.9
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.7e-41 172.9 234 43.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.0e-40 171.0 221 49.3
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.4e-37 160.6 113 66.4
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 5.4e-37 158.7 104 70.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 5.4e-37 158.7 236 41.5
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 9.1e-37 157.9 232 44.0
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.9e-35 152.9 94 76.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 2.5e-34 149.8 154 48.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.7e-33 145.6 119 66.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.5e-31 138.3 123 60.2
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.6e-28 129.0 168 41.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 6.6e-27 125.2 78 76.9
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.7e-22 110.5 79 65.8
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 4.6e-20 102.4 83 63.9
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.0e-15 87.0 71 59.2
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.2e-14 83.6 199 28.6
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 6.0e-12 75.5 105 43.8
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.2e-07 61.2 66 50.0
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.6e-07 60.1 40 60.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 3.4e-07 59.7 78 43.6
Cre03.g204751 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D043992 4.9e-06 55.8 87 37.9


User provided reference genes

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