Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 1.4e-122 443.0 224 100.0
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 7.2e-103 377.5 224 83.9
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 3.4e-100 368.6 224 82.1
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 7.5e-100 367.5 224 81.2
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 6.3e-99 364.4 219 85.4
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 1.1e-98 363.6 218 82.1
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 5.4e-98 361.3 222 79.3
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 7.0e-98 360.9 224 79.0
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 5.9e-97 357.8 224 78.1
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 7.7e-97 357.5 224 79.5
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.3e-96 356.7 224 77.7
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 1.3e-96 356.7 219 80.4
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.3e-96 356.7 224 79.5
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 2.2e-96 355.9 221 79.6
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 2.2e-96 355.9 230 78.3
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 3.8e-96 355.1 217 78.8
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 3.8e-96 355.1 224 79.5
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 5.0e-96 354.8 224 78.1
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 6.5e-96 354.4 224 79.0
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 6.5e-96 354.4 214 81.8
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.5e-95 353.2 221 78.7
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 3.2e-95 352.1 221 79.2
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 4.2e-95 351.7 217 78.3
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 4.2e-95 351.7 224 78.1
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 5.5e-95 351.3 224 77.7
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 7.2e-95 350.9 219 79.5
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 9.4e-95 350.5 207 83.1
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 1.6e-94 349.7 224 77.2
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 2.7e-94 349.0 222 77.5
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 6.1e-94 347.8 224 75.4
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 1.0e-93 347.1 214 79.4
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.4e-93 346.7 224 78.6
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 1.8e-93 346.3 224 77.2
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 1.8e-93 346.3 224 77.2
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 5.2e-93 344.7 224 76.8
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 2.0e-92 342.8 224 76.3
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 2.6e-92 342.4 224 76.3
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 2.6e-92 342.4 224 75.9
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 3.4e-92 342.0 221 76.9
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 4.4e-92 341.7 219 76.7
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 4.4e-92 341.7 214 77.6
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 5.7e-92 341.3 214 78.5
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 5.7e-92 341.3 243 71.2
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 7.5e-92 340.9 224 74.6
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 9.8e-92 340.5 217 77.4
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 2.2e-91 339.3 245 71.0
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 2.8e-91 339.0 224 76.8
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 3.7e-91 338.6 221 76.0
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 6.3e-91 337.8 224 75.4
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 8.3e-91 337.4 223 73.1
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 1.1e-90 337.0 220 74.5
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 2.4e-90 335.9 217 76.5
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 4.1e-90 335.1 221 75.6
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 4.5e-89 331.6 222 74.8
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 4.5e-89 331.6 219 76.3
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 5.9e-89 331.3 224 73.7
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 7.7e-89 330.9 218 76.1
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 1.3e-88 330.1 260 69.6
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 2.3e-88 329.3 218 75.2
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 8.6e-88 327.4 212 75.9
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 4.3e-87 325.1 222 72.5
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 5.6e-87 324.7 222 74.3
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 7.3e-87 324.3 220 72.7
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 9.5e-87 323.9 227 71.8
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 1.2e-86 323.6 222 71.6
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 2.1e-86 322.8 224 71.9
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 6.1e-86 321.2 221 73.8
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 6.1e-86 321.2 222 73.4
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 8.0e-86 320.9 224 70.5
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 1.8e-85 319.7 228 72.8
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 6.8e-85 317.8 222 73.9
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 2.6e-84 315.8 224 68.8
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 9.8e-84 313.9 215 72.6
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 6.4e-83 311.2 215 72.1
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 2.4e-82 309.3 224 70.5
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 5.4e-82 308.1 224 71.0
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 1.2e-81 307.0 193 77.7
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 4.6e-81 305.1 224 67.4
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 3.9e-80 302.0 221 67.4
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 1.1e-79 300.4 200 75.5
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 3.3e-79 298.9 246 64.2
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 6.2e-78 294.7 225 69.3
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 1.8e-77 293.1 207 73.4
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 4.0e-77 292.0 211 70.6
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 5.2e-77 291.6 245 64.9
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 5.8e-76 288.1 195 73.8
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 1.1e-74 283.9 219 65.8
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 4.1e-74 282.0 220 64.5
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.2e-73 280.4 219 65.3
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 2.0e-73 279.6 228 66.2
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 7.8e-73 277.7 225 64.4
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 1.1e-71 273.9 260 58.5
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.1e-69 267.3 178 72.5
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 3.1e-69 265.8 207 65.7
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.1e-63 247.3 218 59.6
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 9.9e-60 234.2 154 74.7
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 1.7e-59 233.4 153 75.2
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 2.2e-59 233.0 208 63.0
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 1.9e-58 229.9 160 72.5
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 3.2e-58 229.2 208 60.1
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 5.4e-58 228.4 273 51.3
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 8.6e-56 221.1 221 52.5
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 7.3e-55 218.0 227 53.3
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 2.7e-49 199.5 221 50.7
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 2.3e-48 196.4 143 65.7
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 4.3e-47 192.2 161 64.0
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 5.6e-47 191.8 199 55.8
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 3.8e-43 179.1 225 47.1
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 2.5e-39 166.4 150 52.7
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 9.9e-36 154.5 85 87.1
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.6e-33 147.1 105 69.5
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 7.9e-33 144.8 385 31.2
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.9e-26 123.6 146 47.9
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 3.2e-26 122.9 143 49.0
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 1.4e-21 107.5 70 71.4
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 4.1e-21 105.9 66 81.8
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 3.8e-19 99.4 134 44.0
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 6.5e-19 98.6 66 78.8
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 7.2e-18 95.1 51 86.3
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 1.8e-16 90.5 71 66.2
SalBow1G0042 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.9e-15 87.0 67 67.2
TAR629G1621 Trochodendron aralioides HOM05D006333 ORTHO05D007799 2.2e-14 83.6 56 76.8
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 6.3e-14 82.0 195 34.4
MBI06_g42292_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 3.4e-12 76.3 53 73.6
Aa31LG4G11880 Aethionema arabicum HOM05D006333 ORTHO05D007799 1.0e-11 74.7 57 66.7
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.2e-10 69.3 99 39.4
Aa31sc286G50 Aethionema arabicum HOM05D006333 ORTHO05D007799 2.7e-09 66.6 45 73.3


User provided reference genes

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