Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 7.4e-56 220.7 146 100.0
Manes.03G098816 Manihot esculenta HOM05D004588 ORTHO05D005365 1.1e-16 90.5 51 92.2
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 2.0e-16 89.7 52 88.5
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 5.7e-16 88.2 46 95.7
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 2.6e-13 79.3 45 84.4
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 3.5e-13 79.0 49 73.5
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 5.9e-13 78.2 46 80.4
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 5.9e-13 78.2 46 82.6
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 7.7e-13 77.8 46 80.4
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.0e-12 77.4 74 55.4
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.0e-12 77.4 46 80.4
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.0e-12 77.4 46 80.4
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 1.3e-12 77.0 46 80.4
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 1.3e-12 77.0 46 80.4
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.7e-12 76.6 46 80.4
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 2.2e-12 76.3 46 76.1
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 2.2e-12 76.3 46 78.3
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 2.9e-12 75.9 49 75.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.9e-12 75.9 46 78.3
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.9e-12 75.9 46 78.3
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 2.9e-12 75.9 46 78.3
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 2.9e-12 75.9 45 80.0
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 2.9e-12 75.9 45 80.0
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 2.9e-12 75.9 46 78.3
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 3.8e-12 75.5 46 80.4
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.8e-12 75.5 46 78.3
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 5.0e-12 75.1 58 65.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 6.5e-12 74.7 46 78.3
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 8.5e-12 74.3 46 78.3
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 8.5e-12 74.3 46 76.1
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 8.5e-12 74.3 46 76.1
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 8.5e-12 74.3 46 78.3
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 1.1e-11 73.9 46 76.1
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 1.5e-11 73.6 46 78.3
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.5e-11 73.6 46 78.3
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.9e-11 73.2 46 76.1
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.9e-11 73.2 50 76.0
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 1.9e-11 73.2 45 75.6
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.9e-11 73.2 72 51.4
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 1.9e-11 73.2 46 76.1
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 2.5e-11 72.8 46 76.1
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 3.2e-11 72.4 45 75.6
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 3.2e-11 72.4 46 76.1
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 3.2e-11 72.4 46 76.1
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 4.2e-11 72.0 46 76.1
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 4.2e-11 72.0 45 73.3
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 5.5e-11 71.6 47 76.6
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 7.2e-11 71.2 46 71.7
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.2e-10 70.5 46 73.9
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.2e-10 70.5 45 73.3
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.2e-10 70.5 46 71.7
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.2e-10 70.5 46 69.6
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 2.1e-10 69.7 46 73.9
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 2.1e-10 69.7 46 71.7
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 2.7e-10 69.3 50 70.0
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.7e-10 69.3 46 73.9
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 2.7e-10 69.3 46 69.6
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 6.1e-10 68.2 46 71.7
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 8.0e-10 67.8 46 71.7
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 8.0e-10 67.8 46 71.7
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 8.0e-10 67.8 46 71.7
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 8.0e-10 67.8 46 69.6
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 8.0e-10 67.8 52 63.5
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 8.0e-10 67.8 46 69.6
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 8.0e-10 67.8 52 65.4
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 1.0e-09 67.4 45 71.1
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 1.0e-09 67.4 45 71.1
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.0e-09 67.4 45 71.1
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 1.0e-09 67.4 52 63.5
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.8e-09 66.6 46 69.6
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 2.3e-09 66.2 45 68.9
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 2.3e-09 66.2 45 68.9
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 3.0e-09 65.9 46 69.6
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 3.0e-09 65.9 46 69.6
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 3.0e-09 65.9 46 65.2
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 4.0e-09 65.5 44 70.5
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 4.0e-09 65.5 45 71.1
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 4.0e-09 65.5 36 88.9
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 5.2e-09 65.1 50 64.0
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 6.7e-09 64.7 45 68.9
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 6.7e-09 64.7 45 68.9
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 6.7e-09 64.7 52 61.5
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 8.8e-09 64.3 52 61.5
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 1.2e-08 63.9 36 86.1
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 1.5e-08 63.5 44 68.2
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 1.5e-08 63.5 35 82.9
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 1.5e-08 63.5 39 76.9
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 1.5e-08 63.5 46 73.9
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 1.5e-08 63.5 65 49.2
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 2.6e-08 62.8 52 59.6
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 2.6e-08 62.8 36 80.6
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 3.3e-08 62.4 36 80.6
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 3.3e-08 62.4 53 66.0
Hund11851 Selenicereus undatus HOM05D004588 ORTHO05D005365 3.3e-08 62.4 45 68.9
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 4.4e-08 62.0 52 59.6
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 4.4e-08 62.0 52 55.8
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 4.4e-08 62.0 52 55.8
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 5.7e-08 61.6 47 66.0
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 5.7e-08 61.6 52 63.5
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 5.7e-08 61.6 45 66.7
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 7.5e-08 61.2 32 90.6
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 7.5e-08 61.2 51 54.9
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 7.5e-08 61.2 37 78.4
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 7.5e-08 61.2 47 66.0
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 9.7e-08 60.8 46 63.0
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 9.7e-08 60.8 53 62.3
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 1.3e-07 60.5 52 63.5
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 1.3e-07 60.5 52 63.5
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 1.7e-07 60.1 36 83.3
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 1.7e-07 60.1 53 62.3
CSS0016928 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 2.2e-07 59.7 45 66.7
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 2.2e-07 59.7 35 80.0
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 2.8e-07 59.3 52 57.7
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 2.8e-07 59.3 47 63.8
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 2.8e-07 59.3 40 70.0
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 3.7e-07 58.9 51 62.7
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 3.7e-07 58.9 45 64.4
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 3.7e-07 58.9 45 64.4
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 3.7e-07 58.9 45 64.4
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 4.8e-07 58.5 36 77.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 4.8e-07 58.5 46 58.7
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 4.8e-07 58.5 32 87.5
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 6.3e-07 58.2 36 80.6
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 6.3e-07 58.2 51 56.9
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 8.2e-07 57.8 45 62.2
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 8.2e-07 57.8 53 62.3
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 8.2e-07 57.8 36 80.6
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 8.2e-07 57.8 31 87.1
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 8.2e-07 57.8 31 87.1
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 1.1e-06 57.4 40 67.5
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 1.1e-06 57.4 36 80.6
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 1.1e-06 57.4 36 80.6
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 1.1e-06 57.4 32 84.4
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 1.4e-06 57.0 35 77.1
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 1.4e-06 57.0 44 56.8
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 1.8e-06 56.6 34 76.5
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 1.8e-06 56.6 34 76.5
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.8e-06 56.6 36 72.2
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 2.4e-06 56.2 45 62.2
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 2.4e-06 56.2 36 72.2
AUR62001361 Chenopodium quinoa HOM05D004588 ORTHO05D005365 3.1e-06 55.8 53 58.5
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 3.1e-06 55.8 39 69.2
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 3.1e-06 55.8 32 81.2
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 3.1e-06 55.8 52 55.8
Peaxi162Scf00047g02426 Petunia axillaris HOM05D000445 ORTHO05D005365 3.1e-06 55.8 43 65.1
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 3.1e-06 55.8 36 75.0
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 4.1e-06 55.5 48 62.5
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 4.1e-06 55.5 36 75.0
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 4.1e-06 55.5 36 75.0
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 4.1e-06 55.5 36 75.0
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 4.1e-06 55.5 47 66.0
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 4.1e-06 55.5 52 53.8
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 4.1e-06 55.5 45 60.0
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 4.1e-06 55.5 36 72.2
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 4.1e-06 55.5 36 72.2
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 4.1e-06 55.5 44 56.8
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 4.1e-06 55.5 36 66.7
A08p03610 Brassica napus HOM05D004588 ORTHO05D005365 5.3e-06 55.1 40 62.5
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 5.3e-06 55.1 36 69.4
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.3e-06 55.1 36 69.4
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.3e-06 55.1 36 69.4
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 7.0e-06 54.7 42 59.5
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 7.0e-06 54.7 42 59.5
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 7.0e-06 54.7 46 65.2
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 7.0e-06 54.7 43 58.1


User provided reference genes

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