Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.5e-89 332.8 165 100.0
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 1.1e-71 273.5 165 78.8
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 6.1e-67 257.7 163 75.5
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 6.8e-66 254.2 170 72.9
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.5e-65 253.1 169 72.8
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.3e-64 250.0 162 74.1
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 1.0e-61 240.4 170 69.4
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.3e-60 235.0 162 70.4
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.3e-60 235.0 162 70.4
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 4.7e-59 231.5 162 67.9
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.7e-59 231.5 162 70.4
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.3e-58 229.2 163 65.0
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.0e-58 228.4 162 67.9
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.2e-57 226.9 160 68.1
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 7.5e-57 224.2 163 65.0
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-56 223.4 162 67.3
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 1.7e-56 223.0 160 68.1
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.7e-56 223.0 160 68.1
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 3.7e-56 221.9 162 67.3
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.1e-55 220.3 157 66.2
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.9e-55 219.5 161 64.6
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 4.1e-55 218.4 163 65.0
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 5.4e-55 218.0 163 64.4
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.0e-55 217.6 157 65.6
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.2e-54 216.9 162 63.0
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 3.5e-54 215.3 159 61.6
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.0e-53 213.8 162 60.5
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.0e-53 213.8 159 61.0
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.3e-53 213.4 159 65.4
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 1.3e-53 213.4 162 59.3
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 3.0e-53 212.2 159 61.6
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.9e-52 209.5 154 66.9
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.9e-52 209.5 162 58.0
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.9e-52 209.5 162 58.0
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 3.3e-52 208.8 160 60.6
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 5.6e-52 208.0 156 59.6
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.6e-51 206.5 150 61.3
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 6.2e-51 204.5 162 62.3
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 5.2e-50 201.4 129 71.3
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 8.9e-50 200.7 160 56.2
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 8.9e-50 200.7 140 63.6
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 4.4e-49 198.4 162 57.4
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 7.5e-49 197.6 164 59.1
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 7.5e-49 197.6 162 56.8
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.3e-48 196.8 153 60.1
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 2.2e-48 196.1 161 57.8
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 6.4e-48 194.5 163 58.9
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 8.3e-48 194.1 159 59.7
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.4e-47 193.4 176 56.2
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 2.4e-47 192.6 162 54.9
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 4.1e-47 191.8 162 55.6
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.1e-47 191.8 161 55.3
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 7.1e-47 191.0 155 56.1
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 2.1e-46 189.5 165 55.8
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 1.3e-45 186.8 158 52.5
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.7e-45 186.4 164 53.7
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 3.0e-45 185.7 162 56.8
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 6.6e-45 184.5 168 55.4
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 8.6e-45 184.1 159 56.0
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 8.6e-45 184.1 164 53.0
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.5e-44 182.6 160 51.2
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.5e-44 182.6 161 50.9
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 4.3e-44 181.8 162 58.0
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 4.3e-44 181.8 162 58.0
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.6e-43 179.9 159 54.7
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 2.1e-43 179.5 169 52.7
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 6.2e-43 177.9 165 52.1
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 8.1e-43 177.6 159 54.1
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 2.3e-42 176.0 141 56.0
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 2.3e-42 176.0 159 49.7
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 5.2e-42 174.9 157 52.9
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 8.9e-42 174.1 151 55.0
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.2e-41 173.7 160 50.0
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 2.0e-41 172.9 169 52.7
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 3.4e-41 172.2 161 45.3
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 4.4e-41 171.8 161 49.7
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 9.9e-41 170.6 157 52.9
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 9.9e-41 170.6 165 47.9
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 9.9e-41 170.6 163 49.7
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 2.2e-40 169.5 162 51.9
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 3.8e-40 168.7 146 52.7
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.4e-40 167.5 158 45.6
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.4e-40 167.5 158 45.6
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 1.9e-39 166.4 156 50.0
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.4e-39 166.0 161 50.3
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 4.1e-39 165.2 161 49.7
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 4.1e-39 165.2 164 47.6
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 5.4e-39 164.9 160 49.4
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.2e-38 163.7 161 45.3
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.6e-38 163.3 164 45.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 1.6e-38 163.3 164 47.6
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.1e-38 162.9 154 47.4
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.7e-38 162.5 139 51.1
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.3e-37 160.2 165 46.7
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.7e-37 159.8 159 52.8
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.7e-37 159.8 159 52.8
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 1.7e-37 159.8 160 51.9
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 3.0e-37 159.1 159 52.2
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 3.0e-37 159.1 160 45.0
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 3.0e-37 159.1 101 67.3
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 3.9e-37 158.7 159 52.2
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.9e-37 158.7 151 48.3
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 5.1e-37 158.3 159 52.2
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 5.1e-37 158.3 158 44.3
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.5e-36 156.0 164 45.1
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 3.3e-36 155.6 164 44.5
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 9.6e-36 154.1 158 49.4
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 9.6e-36 154.1 166 45.2
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 1.6e-35 153.3 158 51.3
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 1.6e-35 153.3 158 51.3
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 4.7e-35 151.8 164 46.3
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 1.8e-34 149.8 163 43.6
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 3.1e-34 149.1 152 52.0
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 3.1e-34 149.1 163 46.0
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 4.0e-34 148.7 159 48.4
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 8.9e-34 147.5 155 49.7
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.2e-33 147.1 156 49.4
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 4.4e-33 145.2 155 45.8
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 4.4e-33 145.2 158 49.4
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.4e-33 145.2 166 41.6
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.6e-33 144.4 166 41.6
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.3e-32 143.7 158 48.7
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 1.3e-32 143.7 158 48.7
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.3e-32 143.7 158 47.5
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.7e-32 143.3 166 41.0
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.2e-32 142.9 160 43.1
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.8e-32 142.1 165 42.4
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 3.8e-32 142.1 153 43.1
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.8e-32 142.1 157 41.4
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 4.9e-32 141.7 160 42.5
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.1e-31 137.9 157 45.9
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 2.7e-30 136.0 164 41.5
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 6.0e-30 134.8 165 43.0
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 7.8e-30 134.4 161 39.8
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.1e-28 130.6 124 50.0
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 1.5e-28 130.2 158 46.2
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 4.3e-28 128.6 145 40.0
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 2.8e-27 125.9 158 44.9
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.6e-27 125.6 116 50.0
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.5e-25 120.2 118 49.2
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.3e-24 117.1 128 46.9
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 3.2e-23 112.5 158 42.4
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 2.7e-22 109.4 129 43.4
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.5e-22 109.0 163 42.3
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 2.5e-20 102.8 162 43.2
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 9.6e-20 100.9 102 49.0
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 2.8e-19 99.4 159 34.6
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.1e-18 97.4 153 37.3
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 2.4e-18 96.3 161 34.2
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 3.1e-18 95.9 144 31.9
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.0e-17 93.2 164 34.1
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 4.5e-17 92.0 130 40.8
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-15 87.0 156 36.5
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.4e-15 87.0 145 35.2
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 7.1e-15 84.7 129 31.8
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.6e-14 83.6 145 33.8
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 3.5e-14 82.4 73 49.3
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.3e-13 80.5 146 30.8
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 1.3e-13 80.5 140 35.0
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.3e-13 79.7 158 38.0
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.5e-12 76.3 158 36.1
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.5e-12 76.3 158 36.1
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 7.4e-12 74.7 116 40.5
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 3.7e-11 72.4 152 34.9
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.0e-09 66.6 135 28.9
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 7.6e-09 64.7 148 29.1
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.5e-07 58.5 143 28.0


User provided reference genes

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