Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 2.5e-87 325.5 172 100.0
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 1.1e-55 220.3 173 66.5
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 3.6e-54 215.3 176 62.5
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 4.8e-54 214.9 172 65.7
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.1e-53 213.8 174 62.6
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 1.1e-53 213.8 172 65.7
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 6.9e-53 211.1 172 64.0
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 9.0e-53 210.7 175 62.3
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 2.6e-52 209.1 172 65.1
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 7.6e-52 207.6 170 61.8
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 7.6e-52 207.6 176 63.6
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 7.6e-52 207.6 176 63.1
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 8.4e-51 204.1 183 60.1
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 8.4e-51 204.1 173 61.8
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 1.6e-49 199.9 172 61.0
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 2.7e-49 199.1 170 64.1
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.7e-49 199.1 173 60.1
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 3.5e-49 198.7 175 61.1
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 6.0e-49 198.0 170 59.4
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 1.3e-48 196.8 171 62.0
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 6.7e-48 194.5 175 59.4
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 4.3e-47 191.8 169 58.0
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 4.3e-47 191.8 169 58.0
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 5.6e-47 191.4 172 57.6
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 7.4e-47 191.0 160 64.4
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 9.6e-47 190.7 169 58.0
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 9.6e-47 190.7 173 61.8
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 1.6e-46 189.9 178 57.9
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 2.8e-46 189.1 177 58.8
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 8.1e-46 187.6 176 55.7
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 1.8e-45 186.4 170 60.6
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 1.8e-45 186.4 170 60.6
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 1.8e-45 186.4 174 55.2
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 2.4e-45 186.0 169 59.8
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 2.4e-45 186.0 174 59.8
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 4.0e-45 185.3 176 55.1
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 6.9e-45 184.5 170 61.2
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.2e-44 183.7 176 54.5
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 2.0e-44 183.0 170 60.0
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 2.0e-44 183.0 170 60.0
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 2.0e-44 183.0 170 60.0
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 2.0e-44 183.0 172 54.1
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 2.0e-44 183.0 172 57.0
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 2.6e-44 182.6 170 60.6
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 5.8e-44 181.4 170 58.8
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 7.6e-44 181.0 170 60.0
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 7.6e-44 181.0 172 55.2
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 1.7e-43 179.9 165 55.8
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 2.9e-43 179.1 172 55.8
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 3.8e-43 178.7 170 58.2
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 3.8e-43 178.7 171 56.1
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.8e-43 178.7 172 57.6
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 6.4e-43 177.9 173 56.1
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 3.2e-42 175.6 170 52.4
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 7.1e-42 174.5 170 55.9
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 9.3e-42 174.1 173 56.1
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.2e-41 173.7 172 55.8
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.1e-41 172.9 173 53.8
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.3e-40 170.2 159 59.1
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 2.3e-40 169.5 172 55.2
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 3.0e-40 169.1 159 58.5
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 6.7e-40 167.9 170 51.8
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.1e-39 167.2 171 52.6
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 1.1e-39 167.2 170 51.2
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 1.5e-39 166.8 170 51.2
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 5.6e-39 164.9 170 50.6
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 2.1e-38 162.9 172 52.9
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 2.8e-38 162.5 170 51.2
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 2.8e-38 162.5 176 49.4
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 3.7e-38 162.2 168 53.0
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 6.9e-37 157.9 178 47.2
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 4.5e-36 155.2 174 48.9
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.2e-35 152.9 170 52.9
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 4.9e-35 151.8 172 50.0
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.9e-34 149.8 162 52.5
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 3.2e-34 149.1 145 57.2
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 3.2e-34 149.1 170 48.8
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 1.8e-32 143.3 172 47.7
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 5.1e-32 141.7 127 56.7
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 5.1e-32 141.7 170 46.5
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 6.7e-32 141.4 168 47.0
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 8.7e-32 141.0 172 43.6
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 1.0e-27 127.5 169 41.4
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 1.1e-26 124.0 172 46.5
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.9e-26 123.2 169 44.4
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 4.2e-26 122.1 143 47.6
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 9.3e-26 120.9 170 42.4
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.8e-24 116.7 170 42.4
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 3.3e-23 112.5 170 40.6
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 3.3e-23 112.5 169 42.6
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 7.4e-23 111.3 150 43.3
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.7e-22 109.0 140 40.7
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 8.5e-19 97.8 170 37.1
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.9e-18 96.7 132 43.9
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 3.1e-13 79.3 118 39.0
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 5.3e-13 78.6 147 35.4
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 3.4e-12 75.9 134 36.6
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 2.9e-11 72.8 133 30.8
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.1e-10 70.9 181 29.8
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.0e-08 64.3 183 26.2
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.4e-08 63.9 69 52.2
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 2.3e-08 63.2 181 26.5
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 9.7e-07 57.8 75 42.7
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 3.7e-06 55.8 88 40.9


User provided reference genes

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