Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 6.2e-244 847.0 433 100.0
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 3.7e-148 528.9 446 65.7
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 1.5e-133 480.3 450 61.1
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 9.6e-128 461.1 438 60.5
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 3.4e-125 452.6 444 59.7
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 3.4e-125 452.6 444 59.7
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 2.8e-119 433.0 445 57.1
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 1.0e-116 424.5 413 58.6
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 1.3e-113 414.1 383 60.1
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 3.9e-113 412.5 374 60.2
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 2.5e-112 409.8 425 54.4
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 2.8e-111 406.4 426 55.6
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 3.7e-111 406.0 440 54.3
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 6.2e-111 405.2 416 54.1
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 1.1e-110 404.4 416 55.8
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 1.1e-110 404.4 420 55.2
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 1.8e-110 403.7 427 53.6
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 2.4e-110 403.3 427 53.6
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 2.4e-110 403.3 379 58.8
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 1.5e-109 400.6 427 53.6
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 2.0e-109 400.2 425 53.4
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 2.0e-109 400.2 415 56.1
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 3.4e-109 399.4 387 57.4
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 1.7e-108 397.1 426 55.4
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 2.2e-108 396.7 426 53.3
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 1.1e-107 394.4 393 56.0
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 4.2e-107 392.5 416 53.1
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 9.3e-107 391.3 381 58.3
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 1.2e-106 391.0 375 55.7
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 3.5e-106 389.4 416 53.6
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 3.0e-105 386.3 423 53.2
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 5.1e-105 385.6 376 56.1
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 6.7e-105 385.2 379 56.7
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 1.9e-104 383.6 433 52.4
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 2.5e-104 383.3 376 55.6
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 5.3e-102 375.6 442 51.4
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 5.0e-100 369.0 438 51.6
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.5e-99 366.7 424 50.5
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 5.5e-99 365.5 392 54.1
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 1.2e-98 364.4 425 51.1
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 2.1e-98 363.6 392 54.1
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 4.6e-98 362.5 483 46.6
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 7.9e-98 361.7 433 51.3
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 1.8e-97 360.5 466 48.9
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 8.8e-97 358.2 445 50.6
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 3.7e-95 352.8 352 55.7
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 1.8e-94 350.5 435 48.5
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 1.8e-94 350.5 330 57.9
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 1.2e-93 347.8 345 56.2
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 2.0e-93 347.1 387 51.7
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 2.6e-93 346.7 387 50.6
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 4.5e-93 345.9 462 47.4
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.2e-92 343.6 427 47.8
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 2.9e-92 343.2 448 47.3
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 1.4e-91 340.9 420 49.5
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 1.4e-91 340.9 430 47.4
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.9e-91 340.5 368 52.7
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 5.5e-91 339.0 441 47.8
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 7.2e-91 338.6 448 46.7
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 1.6e-90 337.4 441 48.1
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.0e-89 334.7 439 46.7
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 4.4e-88 329.3 417 48.9
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 7.4e-88 328.6 442 45.7
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.2e-87 327.0 483 44.5
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 6.3e-87 325.5 381 50.4
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.8e-86 323.9 390 49.0
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 1.8e-86 323.9 427 45.2
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.8e-86 323.9 254 65.7
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 1.2e-85 321.2 422 47.6
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 5.9e-85 318.9 424 45.5
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 2.9e-84 316.6 412 45.9
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 1.6e-82 310.8 413 47.0
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 2.7e-82 310.1 392 46.9
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.4e-81 307.8 418 44.7
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 5.2e-81 305.8 396 46.2
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 5.2e-81 305.8 458 44.1
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.3e-79 301.2 364 46.2
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 3.6e-74 283.1 431 43.6
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 3.0e-73 280.0 407 41.8
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 8.8e-73 278.5 397 43.1
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 9.8e-72 275.0 303 51.5
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 1.1e-70 271.6 400 40.5
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 9.1e-70 268.5 373 43.7
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 2.7e-69 266.9 366 44.5
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.0e-68 265.0 427 42.2
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.2e-68 263.8 427 41.9
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 5.0e-68 262.7 355 42.8
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 2.7e-66 256.9 415 43.6
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.6e-66 256.5 387 45.5
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 3.1e-62 243.4 491 34.6
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 1.3e-60 238.0 331 48.0
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 2.8e-58 230.3 357 42.9
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 1.7e-55 221.1 358 39.4
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.2e-54 216.9 161 67.7
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 3.2e-54 216.9 168 65.5
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.0e-52 211.8 161 65.8
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 5.0e-52 209.5 348 36.8
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 2.9e-47 193.7 284 43.3
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.4e-46 191.4 408 34.3
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 3.2e-46 190.3 121 78.5
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 3.5e-45 186.8 300 41.7
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 1.1e-41 175.3 355 33.8
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 4.6e-37 159.8 393 30.5
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.3e-31 141.7 218 42.7
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.4e-30 138.3 218 42.2
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.1e-27 128.6 86 76.7
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 8.9e-25 119.0 254 34.6
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.4e-22 109.8 73 69.9
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 2.1e-21 107.8 83 69.9
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 1.0e-20 105.5 288 29.5
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 2.3e-20 104.4 291 32.3
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 5.1e-20 103.2 287 30.0
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 3.3e-19 100.5 75 65.3
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 9.3e-14 82.4 77 55.8
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 2.1e-13 81.3 284 26.8
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 6.0e-13 79.7 46 82.6
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 1.3e-12 78.6 49 75.5
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.8e-10 70.9 105 42.9
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 4.8e-10 70.1 199 38.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.1e-09 68.9 72 56.9
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 7.6e-08 62.8 43 69.8
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 1.1e-06 58.9 227 28.6


User provided reference genes

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