Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 0.0e+00 1196.8 635 100.0
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 8.0e-248 860.5 642 70.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.5e-246 854.0 636 69.8
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 5.3e-244 847.8 636 69.2
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.0e-231 805.4 636 66.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 6.3e-229 797.7 635 65.4
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-227 792.7 635 65.5
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-227 792.7 635 65.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 8.6e-226 787.3 638 66.0
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.2e-224 783.5 635 65.2
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.8e-224 782.3 626 66.5
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.6e-222 775.8 636 65.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.3e-221 773.5 635 65.8
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.7e-221 773.1 639 64.3
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 3.5e-219 765.4 649 61.5
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.9e-219 764.6 640 63.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.0e-218 763.8 637 64.4
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.0e-218 761.5 637 64.2
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-217 759.6 649 61.0
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-217 759.6 637 64.4
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-217 759.2 649 61.2
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.6e-217 758.1 649 60.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.6e-216 755.4 636 61.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.1e-215 753.8 649 60.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.8e-215 753.1 649 60.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.8e-215 753.1 649 60.6
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-215 752.3 649 60.6
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.1e-215 752.3 641 63.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.5e-214 747.7 649 60.2
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.7e-213 746.5 641 63.0
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-211 740.0 640 60.6
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.3e-210 736.9 638 62.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.9e-209 733.0 625 62.4
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 5.6e-209 731.5 640 60.2
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 9.9e-206 720.7 638 59.7
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.7e-203 712.6 640 58.9
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 3.5e-203 712.2 638 60.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.3e-202 709.5 642 61.4
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.1e-200 701.0 606 62.0
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.1e-199 699.1 638 58.8
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.6e-198 696.0 641 60.4
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.6e-198 694.5 636 58.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 4.9e-197 691.8 637 58.2
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.1e-196 690.6 653 58.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 7.8e-195 684.5 633 58.8
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 3.0e-194 682.6 634 59.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.5e-193 680.2 668 58.2
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.2e-192 677.2 639 58.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.1e-191 674.1 653 57.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.6e-190 669.5 636 57.4
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.6e-190 669.5 636 56.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.4e-188 663.7 635 57.2
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 7.1e-188 661.4 658 56.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.3e-186 657.1 651 56.2
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.0e-186 656.0 653 56.0
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.1e-186 655.2 641 55.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 5.1e-186 655.2 640 56.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.6e-186 654.8 640 56.1
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 5.6e-185 651.7 652 55.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 7.3e-185 651.4 637 56.7
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 4.8e-184 648.7 632 57.0
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.1e-183 647.5 640 55.9
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.4e-183 647.1 650 54.3
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.8e-183 646.7 570 62.1
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 6.9e-183 644.8 633 56.4
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.4e-180 636.3 653 53.4
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.2e-180 635.6 637 55.4
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 7.1e-180 634.8 639 55.6
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 9.3e-180 634.4 636 55.2
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-179 633.6 637 55.4
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.1e-179 633.3 647 54.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 4.6e-179 632.1 629 54.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 7.9e-179 631.3 638 55.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-178 630.6 638 55.0
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.8e-178 630.2 650 53.4
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.5e-177 626.3 642 53.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 7.4e-177 624.8 638 55.0
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.0e-174 616.7 653 55.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 5.8e-174 615.1 591 58.2
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.2e-171 607.4 643 51.8
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 7.9e-171 604.7 641 53.0
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 7.9e-171 604.7 649 52.5
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.4e-169 598.2 643 51.8
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.6e-168 597.0 632 52.2
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.4e-166 589.3 558 59.9
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 4.5e-166 589.0 646 52.5
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.4e-164 583.9 661 50.4
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.0e-162 577.8 658 49.8
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 3.0e-162 576.2 629 51.7
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.5e-161 573.2 637 52.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.4e-159 567.4 629 50.7
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 3.8e-157 559.3 643 51.3
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 5.5e-156 555.4 621 50.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 5.5e-156 555.4 591 52.5
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 9.4e-156 554.7 627 50.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.5e-153 547.4 616 50.8
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.2e-152 543.5 652 47.7
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.5e-149 531.9 648 49.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.9e-148 530.4 658 48.9
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.3e-145 519.6 472 62.3
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.5e-142 510.8 671 44.6
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.4e-142 509.6 667 45.6
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-140 504.2 472 61.2
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.3e-138 496.9 635 46.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 6.7e-138 495.4 428 62.6
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.4e-137 492.7 636 45.4
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.8e-136 489.2 672 43.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 3.5e-134 483.0 427 60.7
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.4e-127 461.1 500 51.6
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.1e-127 459.5 632 46.5
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.6e-123 447.6 636 44.5
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 5.9e-118 429.1 417 55.6
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 7.7e-118 428.7 633 44.4
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 4.9e-104 382.9 612 42.6
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 4.9e-104 382.9 610 41.6
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 3.2e-103 380.2 610 41.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 3.2e-103 380.2 336 60.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 9.2e-103 378.6 633 41.5
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-102 376.7 633 40.9
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 7.8e-102 375.6 619 41.4
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 3.0e-101 373.6 619 41.2
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.5e-100 371.3 402 50.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 8.9e-98 362.1 347 58.8
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.0e-97 360.9 403 50.9
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.1e-90 338.6 618 37.7
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.7e-86 323.9 616 36.7
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 4.7e-83 313.2 662 33.4
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.2e-79 300.1 613 36.1
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.6e-78 296.6 613 35.9
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-74 284.3 614 34.0
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-72 278.5 598 37.0
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.2e-63 246.9 567 33.3
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 7.4e-60 236.1 544 35.7
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.0e-50 203.8 171 62.6
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.4e-49 200.7 278 47.1
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.9e-48 197.6 317 42.6
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 3.8e-48 197.2 641 27.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-42 178.7 190 56.3
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.1e-38 164.9 118 67.8
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.7e-38 164.5 149 57.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 7.9e-38 162.9 126 62.7
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.2e-35 154.8 120 67.5
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 2.2e-35 154.8 126 65.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-32 145.6 370 32.4
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 4.7e-30 137.1 94 68.1
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-29 136.0 105 63.8
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 5.1e-29 133.7 158 54.4
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 7.4e-28 129.8 94 64.9
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 7.0e-26 123.2 90 63.3
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 4.5e-25 120.6 97 66.0
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-24 117.9 90 62.2
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 6.5e-24 116.7 71 77.5
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-22 111.7 90 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 3.6e-22 110.9 180 37.8
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.7e-22 110.5 108 56.5
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 6.1e-22 110.2 136 50.7
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 4.4e-20 104.0 71 69.0
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.8e-19 101.3 80 61.2
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 8.2e-19 99.8 220 35.5
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 3.1e-18 97.8 220 35.0
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 3.1e-18 97.8 220 35.0
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 7.7e-17 93.2 116 46.6
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.3e-16 92.4 175 40.6
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.7e-16 92.0 359 25.6
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.3e-13 81.6 51 72.5
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-11 74.3 98 40.8
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 3.7e-11 74.3 61 63.9
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-10 72.4 71 56.3
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-09 68.6 80 48.8
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 6.5e-08 63.5 121 36.4
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-08 63.2 76 50.0
Actinidia21257 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.5e-07 60.5 58 56.9
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 5.5e-07 60.5 48 58.3


User provided reference genes

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