Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.1e-142 508.4 255 100.0
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 3.4e-72 275.8 254 59.1
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.8e-72 274.2 250 59.2
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.7e-71 273.5 249 57.4
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.7e-71 273.5 250 59.2
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 8.3e-71 271.2 253 57.7
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.2e-70 269.2 249 55.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-69 266.5 253 56.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.9e-68 262.7 248 53.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 6.1e-66 255.0 249 53.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.8e-65 251.5 250 54.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 6.8e-65 251.5 245 54.7
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.4e-64 248.8 249 51.8
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 4.4e-64 248.8 245 57.6
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.7e-63 246.9 246 53.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.4e-62 243.0 244 54.1
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.4e-62 241.9 242 53.3
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-61 240.4 243 54.7
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.0e-61 240.0 243 54.3
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 3.5e-61 239.2 241 52.7
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 6.0e-61 238.4 252 50.0
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.7e-60 236.9 242 52.5
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 2.3e-60 236.5 235 52.3
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.0e-60 236.1 254 48.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.9e-60 235.7 243 49.8
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 6.6e-60 235.0 240 52.1
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.9e-59 233.4 250 49.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.5e-59 233.0 242 54.1
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.3e-59 232.3 244 51.2
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 5.6e-59 231.9 244 52.5
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 9.5e-59 231.1 250 46.4
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 9.5e-59 231.1 234 50.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.6e-58 230.3 243 52.7
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.6e-58 230.3 249 51.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.6e-58 230.3 248 52.8
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.6e-58 230.3 242 49.6
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.6e-58 230.3 230 52.2
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 2.1e-58 229.9 243 52.3
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.8e-58 229.6 248 52.8
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.7e-58 228.8 236 50.8
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 4.7e-58 228.8 243 52.3
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 8.1e-58 228.0 251 51.4
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.4e-57 227.3 241 51.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.4e-57 227.3 245 52.2
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.8e-57 226.9 248 52.4
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 2.3e-57 226.5 240 49.2
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 3.1e-57 226.1 236 50.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 4.0e-57 225.7 242 48.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.2e-56 224.2 232 50.9
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.4e-56 222.6 231 51.1
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 4.4e-56 222.2 241 49.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 5.8e-56 221.9 243 51.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 5.8e-56 221.9 243 51.0
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 9.8e-56 221.1 251 49.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.3e-55 220.7 256 48.0
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.7e-55 220.3 246 49.2
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 2.2e-55 219.9 248 50.0
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.9e-55 219.5 245 52.2
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.7e-55 219.2 255 46.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.7e-55 219.2 238 48.3
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.7e-55 219.2 250 49.6
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 3.7e-55 219.2 256 48.0
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.1e-54 217.6 241 50.6
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.4e-54 217.2 216 56.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-54 217.2 210 54.3
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.9e-54 216.9 216 56.0
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.1e-53 213.4 237 48.9
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.7e-52 210.3 230 48.7
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 3.0e-52 209.5 246 49.6
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 6.6e-52 208.4 248 48.4
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.1e-51 207.6 280 44.3
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.5e-51 207.2 253 46.2
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.5e-51 206.5 252 48.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.3e-51 206.1 289 42.6
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.3e-51 206.1 254 46.1
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.3e-51 205.7 244 48.8
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.2e-50 204.1 238 49.6
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 2.1e-50 203.4 207 52.7
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.8e-50 203.0 242 47.9
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 3.6e-50 202.6 245 49.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.1e-50 201.4 256 45.7
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.8e-49 200.3 240 47.5
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 4.0e-49 199.1 236 47.5
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.2e-48 197.6 177 55.9
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 3.4e-48 196.1 239 46.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 7.6e-48 194.9 231 47.2
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.3e-47 194.1 246 47.2
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.7e-47 193.7 231 48.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.9e-47 193.0 237 41.8
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.9e-47 193.0 238 44.5
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.9e-47 192.2 242 46.7
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.1e-46 191.0 239 46.0
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.2e-46 188.0 237 41.8
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.0e-44 184.5 260 37.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.1e-43 181.0 262 42.4
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.5e-43 179.9 241 41.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.3e-43 179.5 220 45.5
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.6e-43 178.7 254 41.3
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 7.3e-43 178.3 262 40.8
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 9.6e-43 177.9 266 38.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.7e-42 175.6 236 42.8
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.4e-41 173.3 210 44.8
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.8e-41 171.8 144 56.2
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-40 170.2 210 43.8
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.6e-40 169.9 250 39.2
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 3.4e-40 169.5 142 56.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 4.4e-40 169.1 251 43.4
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.7e-39 167.2 252 40.1
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.6e-37 160.6 234 38.9
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.6e-37 160.6 248 39.1
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.7e-37 159.8 237 37.6
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 4.6e-37 159.1 240 38.3
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.7e-36 157.1 240 37.5
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 3.3e-35 152.9 241 37.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-35 152.9 241 37.8
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.6e-35 152.1 241 37.3
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.6e-35 152.1 198 44.4
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 6.2e-34 148.7 241 36.9
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.4e-33 147.5 249 36.1
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.4e-33 147.5 252 38.1
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.4e-33 146.7 252 38.1
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 2.0e-32 143.7 224 40.6
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.2e-30 136.3 216 37.5
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 7.1e-30 135.2 177 40.7
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.6e-29 134.0 287 30.3
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.7e-29 133.3 251 32.7
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.1e-27 127.9 204 38.2
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.6e-27 125.6 88 71.6
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 9.6e-27 124.8 181 39.2
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 6.2e-26 122.1 191 38.7
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.1e-25 121.3 84 73.8
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 9.9e-24 114.8 85 68.2
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.3e-23 114.4 65 80.0
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 7.1e-22 108.6 218 32.1
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.2e-21 107.8 169 39.6
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.8e-20 104.0 106 51.9
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 2.1e-18 97.1 170 38.2
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 4.8e-18 95.9 67 67.2
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.0e-15 88.2 59 69.5
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 3.5e-13 79.7 70 64.3
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.8e-09 67.4 55 58.2
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.5e-06 55.8 128 32.8


User provided reference genes

Program Settings