Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1916.7 953 100.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1899.0 951 99.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1640.9 1054 81.2
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1576.2 1061 78.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1240.3 1071 60.3
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1225.3 1061 58.6
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1224.2 1033 60.0
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1220.3 1064 59.8
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1218.0 1056 57.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1209.9 1024 57.8
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1198.0 1059 58.2
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1196.4 1046 58.9
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1171.4 1048 57.6
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1171.0 1061 56.5
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1167.5 1033 56.4
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1161.4 1033 56.1
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1159.4 1039 56.7
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1151.7 1052 56.8
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1147.1 1035 57.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1141.7 1028 57.3
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1137.9 1065 54.6
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1128.6 1038 54.9
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1128.2 1043 56.0
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1127.9 1039 55.1
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1127.5 1054 54.4
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1126.3 1067 54.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1117.1 1054 54.2
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1111.7 1062 53.3
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1108.2 1061 53.7
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1102.4 1011 55.4
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1102.4 1011 55.4
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1100.5 1086 54.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1092.8 1023 54.5
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1080.9 1051 54.0
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1076.6 1026 53.2
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 9.3e-309 1063.5 1044 53.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 7.9e-308 1060.4 1049 52.9
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 6.7e-307 1057.4 1025 53.2
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 4.3e-306 1054.7 1064 53.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 1.3e-305 1053.1 1055 51.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 7.6e-303 1043.9 1038 52.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 2.9e-302 1042.0 650 82.6
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 8.4e-302 1040.4 1031 51.2
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.1e-300 1035.8 958 54.2
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.9e-300 1033.9 958 55.0
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.1e-298 1030.0 1059 51.0
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.4e-296 1023.1 1036 50.6
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 1.2e-295 1020.0 1055 50.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 4.5e-295 1018.1 1041 51.9
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 2.9e-294 1015.4 1006 52.3
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 2.5e-293 1012.3 1038 51.1
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 2.5e-293 1012.3 1116 48.1
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 5.5e-293 1011.1 1028 51.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 9.3e-293 1010.4 1030 51.3
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 1.0e-291 1006.9 925 54.8
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 3.9e-291 1005.0 975 52.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 3.4e-287 991.9 1034 49.5
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 5.9e-287 991.1 1023 50.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 4.6e-284 981.5 1061 48.8
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 9.1e-280 967.2 1008 49.5
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 5.1e-275 951.4 1041 48.4
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.3e-273 946.8 1023 48.8
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 3.7e-273 945.3 1092 47.0
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.8e-273 944.9 1082 46.8
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.8e-272 943.0 1059 47.9
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 5.0e-270 934.9 1018 48.0
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 4.4e-266 921.8 1037 47.4
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.1e-264 917.1 1018 48.2
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.2e-262 909.4 840 56.0
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.5e-261 904.8 890 52.2
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 5.5e-261 904.8 923 50.5
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.6e-260 902.1 982 47.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 8.0e-260 901.0 878 53.4
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 9.8e-258 894.0 1058 45.2
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 5.0e-254 881.7 1044 46.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 7.2e-253 877.9 1025 46.0
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.4e-251 873.6 994 47.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.8e-251 873.2 894 51.7
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 8.0e-236 821.2 770 55.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.6e-234 816.2 768 54.0
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.2e-232 809.3 1041 42.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 5.0e-230 802.0 881 49.4
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 6.6e-230 801.6 1041 43.5
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.0e-226 790.0 1039 41.8
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.5e-218 763.8 1030 43.4
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.8e-211 740.3 758 51.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 5.1e-206 722.2 995 40.7
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.6e-204 716.1 693 54.0
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.3e-197 693.0 803 48.4
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.4e-195 687.6 1031 39.3
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 4.5e-186 656.0 490 64.3
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 4.1e-179 632.9 1025 36.5
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 2.8e-172 610.1 699 48.1
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 9.7e-165 585.1 746 44.5
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.6e-154 551.2 471 58.6
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.7e-149 532.7 552 51.4
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 9.2e-131 472.2 642 41.3
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 9.5e-128 462.2 349 62.8
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-125 454.9 380 60.3
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.0e-121 442.2 452 49.6
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 9.5e-120 435.6 220 95.9
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.7e-113 414.8 328 62.8
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 9.5e-112 409.1 352 57.4
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 5.6e-80 303.5 266 60.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 4.2e-75 287.3 229 62.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.5e-75 287.0 988 26.3
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.3e-72 277.3 291 45.4
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 3.3e-64 251.1 206 58.7
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.2e-61 242.7 188 60.1
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 2.6e-61 241.5 347 40.6
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 6.1e-58 230.3 176 64.8
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.2e-51 207.6 181 55.8
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-49 202.6 181 55.2
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 8.8e-49 199.9 181 54.7
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.1e-46 191.0 147 65.3
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.0e-41 176.4 843 24.2
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.6e-40 171.8 206 41.7
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 3.7e-39 167.9 689 22.5
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.5e-37 161.0 115 63.5
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.7e-37 160.2 1051 22.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.7e-36 159.1 136 57.4
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 5.0e-36 157.5 124 59.7
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 3.2e-35 154.8 134 59.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 5.2e-33 147.5 154 44.2
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 2.6e-32 145.2 119 55.5
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.1e-30 137.9 513 25.7
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 1.3e-28 132.9 134 47.8
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.0e-24 119.0 144 45.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.8e-22 112.5 373 26.5
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 5.4e-22 110.9 84 59.5
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.0e-22 110.5 669 23.5
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.8e-20 104.8 349 25.8
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 5.0e-20 104.4 77 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.6e-20 104.0 875 21.4
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.6e-18 99.4 92 50.0
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.4e-14 84.3 96 43.8
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-12 78.6 257 24.1
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 6.6e-12 77.4 60 58.3
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.9e-11 75.9 60 56.7
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.8e-09 67.4 64 53.1
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.6e-08 65.5 66 50.0
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.2e-07 62.4 38 73.7
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.9e-07 62.0 74 43.2
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 7.0e-06 57.4 129 38.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 7.0e-06 57.4 64 43.8


User provided reference genes

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