Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 2055.4 1026 100.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1703.3 1135 79.1
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1684.1 1015 85.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1575.1 1061 78.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1247.3 1150 57.9
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1225.7 1141 56.5
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1219.5 1143 56.9
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1211.8 1088 59.7
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1199.1 1121 56.7
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1169.5 1150 54.8
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1167.5 1084 55.4
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1156.4 1145 54.3
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1137.5 1122 54.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1124.0 1105 53.0
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1120.9 1139 52.9
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1117.1 1094 54.7
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1110.9 1105 52.6
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1109.0 1044 54.5
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1106.7 1041 54.6
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1099.0 1122 51.4
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1092.0 1077 53.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1090.1 1085 54.4
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1088.6 1167 51.9
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1086.6 1063 53.3
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1080.1 1109 51.8
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1079.3 1047 53.3
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1078.5 1136 52.1
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1075.5 1112 51.2
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1075.5 1148 52.4
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 7.0e-312 1073.9 1083 53.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 2.1e-311 1072.4 1063 53.1
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.1e-310 1070.1 1076 52.2
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.1e-310 1070.1 1076 52.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 2.0e-309 1065.8 1082 52.1
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 1.4e-307 1059.7 1152 51.6
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 3.3e-304 1048.5 1115 50.3
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 2.2e-300 1035.8 1127 48.9
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 1.6e-293 1013.1 1103 50.1
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 5.0e-292 1008.1 1065 50.7
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.2e-290 1003.4 1121 48.6
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.6e-290 1003.0 1097 50.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.6e-290 1003.0 658 79.6
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.7e-290 1002.3 1067 50.3
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.4e-289 1000.0 1124 48.0
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 7.5e-288 994.2 1060 49.7
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 1.6e-285 986.5 1083 49.7
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.7e-284 983.0 1065 49.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.1e-283 980.3 1003 51.0
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 6.1e-282 974.5 1153 47.1
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.4e-281 973.4 1131 47.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 1.2e-277 960.3 932 53.3
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 5.9e-277 958.0 1102 47.6
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 2.3e-276 956.1 1036 49.5
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 5.0e-276 954.9 1063 48.6
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 3.3e-275 952.2 1049 49.5
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.2e-274 950.3 1073 48.1
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.0e-273 947.2 1105 47.2
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 3.0e-273 945.7 1053 48.7
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 4.0e-273 945.3 1063 48.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.2e-272 943.7 1055 48.5
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.6e-272 942.6 1147 45.6
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 3.7e-271 938.7 1031 48.8
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 2.4e-270 936.0 983 50.5
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.2e-270 934.1 1091 46.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.2e-269 933.7 1042 47.6
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.3e-263 913.7 1118 45.5
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.7e-261 906.0 1045 47.5
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 5.0e-260 901.7 953 50.2
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 2.1e-258 896.3 1114 45.2
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.4e-257 893.6 886 53.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 5.8e-256 888.3 990 47.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 1.9e-251 873.2 783 57.9
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.1e-249 867.5 1052 45.8
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 3.1e-249 865.9 1070 44.5
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 6.8e-249 864.8 883 52.3
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.7e-247 860.1 1046 46.1
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.0e-240 836.6 905 49.8
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 4.7e-234 815.5 1197 40.4
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.1e-233 812.8 896 49.4
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.7e-229 799.7 892 49.3
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 8.1e-226 788.1 727 57.2
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.1e-219 767.7 1059 41.3
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.5e-219 767.3 800 52.1
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 2.2e-215 753.4 753 53.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 3.8e-215 752.7 889 48.1
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 3.3e-211 739.6 1132 39.8
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.2e-207 726.9 1099 38.9
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.9e-206 723.8 653 57.0
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 5.5e-206 722.2 1114 40.8
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 9.7e-203 711.4 766 50.4
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.3e-202 711.1 560 63.4
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 4.1e-193 679.5 1001 40.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.4e-192 676.4 701 52.4
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 5.7e-171 605.9 1092 35.3
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 9.1e-169 598.6 1077 36.6
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.2e-152 545.0 622 46.6
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.9e-130 469.9 364 62.1
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.3e-126 457.2 402 59.5
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.7e-120 437.6 220 96.4
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-114 418.3 489 46.6
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.3e-111 408.7 649 38.2
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 8.2e-85 319.7 221 68.8
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.5e-78 298.9 266 59.8
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.0e-75 288.5 229 62.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.9e-72 276.6 944 25.4
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.2e-66 258.5 278 49.6
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 9.7e-62 243.0 380 39.2
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 3.7e-61 241.1 193 59.1
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 5.5e-57 227.3 179 64.8
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.1e-52 211.1 181 56.4
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.0e-50 206.5 181 55.8
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 6.5e-50 203.8 181 55.2
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-49 202.6 130 76.9
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.0e-43 182.2 474 27.2
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.1e-40 172.2 206 41.7
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 4.4e-38 164.5 454 24.7
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.9e-37 161.8 115 63.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.4e-36 159.5 136 57.4
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 3.2e-36 158.3 124 59.7
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.7e-35 155.2 134 59.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 2.5e-33 148.7 154 44.2
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 2.8e-32 145.2 119 55.5
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 8.3e-29 133.7 134 47.8
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 7.8e-27 127.1 307 29.0
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.2e-24 119.8 144 45.8
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-24 119.4 112 51.8
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-23 116.7 368 25.8
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 2.3e-23 115.5 132 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.0e-22 112.5 756 22.2
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 7.5e-22 110.5 84 56.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 7.5e-22 110.5 84 58.3
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 2.9e-21 108.6 84 58.3
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 5.4e-20 104.4 77 63.6
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.5e-19 101.7 367 24.8
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.9e-13 82.0 96 42.7
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.4e-13 80.9 348 24.1
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 8.4e-13 80.5 60 60.0
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.9e-12 79.3 308 26.9
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 2.4e-12 79.0 60 58.3
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.1e-12 78.2 257 24.1
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.3e-09 68.6 64 54.7
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.3e-09 68.2 66 51.5
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 7.3e-09 67.4 86 41.9
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.1e-07 63.5 69 47.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.5e-06 59.7 87 35.6
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 3.4e-06 58.5 34 67.6
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 9.9e-06 57.0 74 47.3


User provided reference genes

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