Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 2010.0 1002 100.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1699.9 1086 81.7
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1683.3 1015 85.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1639.4 1054 81.2
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1276.2 1093 59.6
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1273.8 1103 60.6
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1266.5 1073 60.6
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1256.1 1096 59.9
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1255.7 1082 58.6
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1241.1 1102 58.3
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1240.7 1080 60.3
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1231.5 1095 57.9
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1204.9 1070 58.3
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1203.0 1039 58.0
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1202.6 1086 58.0
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1200.3 1091 56.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1197.2 1076 56.5
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1191.8 1036 57.7
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1187.9 1033 57.4
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1183.7 1055 56.7
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1181.0 1069 56.9
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1181.0 1096 54.7
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1176.4 1075 57.1
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1175.2 1095 55.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1174.8 1055 56.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1169.8 1076 56.7
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1167.5 1069 57.3
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1161.7 1065 55.7
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1161.7 1065 55.7
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1158.7 1104 54.5
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1157.9 1039 56.6
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1147.5 1117 55.1
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1144.0 1065 55.2
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1124.4 1086 55.4
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1108.2 1117 53.8
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1106.7 1107 52.5
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1098.2 1084 53.5
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1095.5 1089 53.2
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1091.3 1057 53.7
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1090.9 1052 53.5
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1089.7 839 63.5
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1089.3 1079 52.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1087.8 1075 53.2
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1079.3 1057 53.1
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1075.1 650 84.8
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.4e-311 1072.8 1111 50.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.4e-310 1069.7 884 59.8
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.4e-307 1058.9 987 56.0
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 6.6e-305 1050.8 1055 52.3
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 6.6e-305 1050.8 1081 51.8
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 8.6e-305 1050.4 1028 53.1
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 2.5e-304 1048.9 1038 53.2
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.6e-303 1046.2 1093 50.7
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 2.6e-301 1038.9 1038 52.4
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 2.6e-301 1038.9 1028 52.7
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 4.9e-300 1034.6 1028 52.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 9.2e-299 1030.4 975 54.3
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 2.5e-296 1022.3 1123 49.8
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.6e-295 1019.6 1034 50.9
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 5.8e-293 1011.1 1090 49.8
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 2.9e-292 1008.8 1076 50.7
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 4.9e-292 1008.1 1058 50.7
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 2.7e-290 1002.3 1023 50.9
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 6.6e-289 997.7 805 60.9
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.3e-288 995.0 1135 47.4
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.1e-287 992.6 770 63.5
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 4.0e-286 988.4 1008 50.8
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 6.8e-286 987.6 1018 50.1
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.1e-283 978.4 1018 50.6
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.9e-280 969.5 915 54.8
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 3.4e-277 958.7 1087 47.8
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 4.6e-274 948.3 984 49.1
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.2e-271 940.3 878 55.9
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 2.4e-270 936.0 1044 48.7
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.0e-269 932.9 882 54.6
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 5.4e-267 924.9 1062 46.8
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.9e-265 918.7 888 54.3
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 3.3e-264 915.6 904 54.6
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 2.1e-263 912.9 994 48.9
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 8.4e-252 874.4 1144 42.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.8e-247 859.4 1069 43.3
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.9e-240 836.6 769 57.0
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 3.3e-240 835.9 881 51.5
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 3.6e-234 815.8 1040 43.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 4.5e-229 798.9 718 57.4
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.2e-223 780.0 1090 41.0
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 3.4e-221 772.7 1063 43.6
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 5.9e-221 771.9 833 50.1
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 4.7e-218 762.3 746 53.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 5.9e-213 745.3 693 56.7
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.4e-209 734.2 639 57.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.0e-205 720.3 995 40.7
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.1e-203 714.5 552 64.1
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 8.8e-193 678.3 1023 38.0
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.1e-187 661.4 1061 38.5
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.1e-155 555.1 614 47.1
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.9e-148 530.0 641 45.1
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 9.6e-139 498.8 488 53.5
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 2.8e-130 470.7 364 61.8
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 4.1e-121 440.3 360 61.7
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-120 438.3 220 96.4
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-95 355.5 298 61.1
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.5e-83 315.5 218 70.2
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-75 288.9 229 62.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.5e-75 288.9 966 26.5
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.8e-71 274.2 352 44.9
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.8e-61 241.5 193 59.1
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.9e-57 228.8 179 64.2
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 8.9e-52 209.9 181 56.9
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.2e-50 205.3 181 56.4
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-50 204.9 874 24.0
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-49 202.6 181 55.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-48 199.5 130 74.6
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 1.5e-46 192.6 308 35.7
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 7.3e-46 190.3 137 65.7
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.7e-40 171.8 206 41.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 6.6e-39 167.2 276 42.8
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 9.6e-38 163.3 454 25.1
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.7e-37 161.0 115 63.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.8e-36 159.1 136 57.4
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 5.3e-36 157.5 124 59.7
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 3.4e-35 154.8 134 59.7
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.6e-32 146.0 154 45.5
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 2.3e-31 142.1 99 63.6
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 3.9e-31 141.4 116 56.0
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.8e-29 134.4 894 21.8
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 6.9e-28 130.6 133 47.4
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.0e-23 116.7 143 45.5
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 3.7e-21 108.2 84 56.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 4.8e-21 107.8 84 56.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 5.3e-20 104.4 77 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.1e-17 94.0 506 22.3
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.3e-17 93.6 503 21.9
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 5.6e-14 84.3 70 57.1
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.1e-12 80.1 60 58.3
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 3.1e-12 78.6 60 56.7
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.3e-12 77.8 237 25.3
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.8e-11 74.3 473 23.3
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.2e-09 68.6 66 51.5
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 7.1e-09 67.4 64 53.1
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 7.1e-09 67.4 86 43.0
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 9.3e-09 67.0 55 54.5
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.0e-07 63.5 259 24.7
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.8e-07 62.8 74 43.2
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.9e-06 59.3 95 36.8
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 5.7e-06 57.8 129 38.0


User provided reference genes

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