Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 3.7e-91 338.2 170 100.0
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 4.2e-63 245.0 186 68.8
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.0e-49 199.5 173 63.6
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 2.0e-44 183.0 172 57.6
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 7.5e-44 181.0 168 60.7
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 1.3e-43 180.3 172 55.8
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 6.6e-40 167.9 175 54.3
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.3e-39 165.6 176 52.8
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 1.8e-37 159.8 169 53.8
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 3.1e-37 159.1 166 53.0
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 8.9e-37 157.5 171 51.5
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 1.5e-36 156.8 181 51.4
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.5e-36 156.8 175 49.1
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.2e-35 152.9 164 53.0
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 3.7e-35 152.1 172 52.9
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.1e-34 148.7 164 52.4
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 4.1e-34 148.7 172 53.5
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 2.1e-33 146.4 161 50.9
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.5e-33 145.6 164 51.2
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.3e-32 142.9 179 46.9
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 5.1e-32 141.7 167 51.5
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.2e-30 137.1 161 48.4
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 3.6e-30 135.6 184 45.1
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 6.2e-30 134.8 162 50.6
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 1.4e-29 133.7 164 53.7
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 1.4e-29 133.7 164 53.7
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 1.4e-29 133.7 164 53.7
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.1e-29 132.5 172 45.3
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 3.8e-27 125.6 174 48.9
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.4e-26 123.6 172 48.8
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 3.2e-26 122.5 165 47.3
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 9.2e-26 120.9 178 43.3
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 9.2e-26 120.9 169 43.2
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 2.7e-25 119.4 179 42.5
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 1.0e-24 117.5 203 45.3
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 1.3e-24 117.1 169 46.2
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 1.1e-23 114.0 173 45.1
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 2.5e-23 112.8 142 50.0
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 2.5e-23 112.8 165 46.1
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 2.5e-23 112.8 175 44.0
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 5.6e-23 111.7 135 49.6
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 7.3e-23 111.3 167 44.9
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.6e-22 109.0 165 45.5
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.1e-21 107.5 161 47.2
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 1.8e-21 106.7 146 43.2
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 2.4e-21 106.3 138 52.2
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 3.1e-21 105.9 177 44.6
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 4.0e-21 105.5 107 60.7
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 5.2e-21 105.1 107 59.8
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 6.9e-21 104.8 107 59.8
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 2.0e-20 103.2 158 39.2
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 4.4e-20 102.1 137 46.7
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 4.4e-20 102.1 107 58.9
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 4.4e-20 102.1 102 58.8
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 7.6e-20 101.3 147 41.5
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.7e-19 100.1 188 39.4
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 8.4e-19 97.8 150 43.3
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 4.2e-18 95.5 179 36.3
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 5.4e-18 95.1 146 43.2
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.4e-18 95.1 170 39.4
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 5.4e-18 95.1 170 39.4
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 5.4e-18 95.1 146 43.8
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 5.4e-18 95.1 166 39.8
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 9.3e-18 94.4 155 41.3
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 7.8e-17 91.3 140 39.3
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 1.3e-16 90.5 152 43.4
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 5.1e-16 88.6 136 40.4
Peaxi162Scf00832g00006 Petunia axillaris HOM05D030065 ORTHO05D005174 8.7e-16 87.8 133 42.9
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 8.7e-16 87.8 166 39.8
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 2.5e-15 86.3 71 63.4
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 7.3e-15 84.7 183 37.7
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 7.3e-15 84.7 79 57.0
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 7.3e-15 84.7 79 57.0
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 9.6e-15 84.3 169 37.3
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 1.3e-14 84.0 88 53.4
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 1.3e-14 84.0 171 37.4
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.6e-14 82.4 177 35.0
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 3.6e-14 82.4 153 35.3
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 4.8e-14 82.0 152 36.2
Rhsim01G0227100 Rhododendron simsii HOM05D005967 ORTHO05D005174 4.8e-14 82.0 120 41.7
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 4.8e-14 82.0 82 52.4
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 6.2e-14 81.6 78 55.1
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 6.2e-14 81.6 164 36.6
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 8.1e-14 81.3 86 55.8
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 8.1e-14 81.3 152 34.9
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 8.1e-14 81.3 108 44.4
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 2.4e-13 79.7 127 43.3
Migut.N02671 Erythranthe guttata HOM05D005967 ORTHO05D005174 4.0e-13 79.0 111 43.2
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 5.3e-13 78.6 197 35.5
Ca_28209_v3 Cicer arietinum L. HOM05D005967 ORTHO05D005174 6.9e-13 78.2 93 53.8
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 6.9e-13 78.2 170 33.5
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 6.9e-13 78.2 154 33.8
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.2e-12 77.4 134 38.1
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 2.6e-12 76.3 124 43.5
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.5e-12 75.5 82 52.4
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 2.2e-11 73.2 83 54.2
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 2.2e-11 73.2 177 34.5
Psat7g217000 Pisum sativum HOM05D005967 ORTHO05D005174 2.2e-11 73.2 118 45.8
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 4.9e-11 72.0 70 58.6
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 4.9e-11 72.0 73 49.3
Psat0s8791g0040 Pisum sativum HOM05D005967 ORTHO05D005174 1.4e-10 70.5 117 43.6
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.9e-10 70.1 111 40.5
Nitab4.5_0004094g0010 Nicotiana tabacum HOM05D005967 ORTHO05D005174 1.9e-10 70.1 95 47.4
Medtr4g063885 Medicago truncatula HOM05D005967 ORTHO05D005174 3.2e-10 69.3 87 51.7
TAR688G0002 Trochodendron aralioides HOM05D000645 ORTHO05D005174 3.2e-10 69.3 146 32.2
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 4.6e-09 65.5 115 42.6
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 4.6e-09 65.5 172 36.0
Carub.0004s0986 Capsella rubella HOM05D010012 ORTHO05D012171 7.9e-09 64.7 158 34.8
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 7.9e-09 64.7 79 53.2
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.0e-08 64.3 111 41.4
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 1.8e-08 63.5 120 38.3
A04p21920 Brassica napus HOM05D010012 ORTHO05D012171 3.0e-08 62.8 164 34.8
CARHR122020 Cardamine hirsuta HOM05D010012 ORTHO05D012171 3.0e-08 62.8 166 31.3
TPR.G14476 Trifolium pratense HOM05D005967 ORTHO05D005174 3.0e-08 62.8 105 45.7
AL4G23400 Arabidopsis lyrata HOM05D010012 ORTHO05D012171 3.9e-08 62.4 164 31.7
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 5.1e-08 62.0 136 34.6
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 6.7e-08 61.6 132 37.9
ATR0559G028 Amborella trichopoda HOM05D005967 ORTHO05D005174 6.7e-08 61.6 153 32.0
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 8.7e-08 61.2 166 36.1
BcaC02g08129 Brassica carinata HOM05D010012 ORTHO05D012171 1.1e-07 60.8 164 34.8
C04p58060 Brassica napus HOM05D010012 ORTHO05D012171 1.1e-07 60.8 164 34.8
BolC4t27332H Brassica oleracea HOM05D010012 ORTHO05D012171 1.1e-07 60.8 164 34.8
Lsat_1_v5_gn_9_23241 Lactuca sativa HOM05D030279 ORTHO05D029282 1.1e-07 60.8 98 43.9
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.1e-07 60.8 137 38.7
BcaB06g28260 Brassica carinata HOM05D010012 ORTHO05D012171 1.5e-07 60.5 83 48.2
Solyc11g066000.1 Solanum lycopersicum HOM05D030065 ORTHO05D005174 1.5e-07 60.5 59 52.5
THA.LOC104799445 Tarenaya hassleriana HOM05D012305 ORTHO05D014046 1.5e-07 60.5 142 35.2
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.9e-07 60.1 158 30.4
Lalb_Chr01g0003691 Lupinus albus HOM05D005967 ORTHO05D005174 2.5e-07 59.7 78 44.9
Lalb_Chr03g0026661 Lupinus albus HOM05D005967 ORTHO05D005174 2.5e-07 59.7 132 34.1
Sp4g11680 Schrenkiella parvula HOM05D010012 ORTHO05D012171 2.5e-07 59.7 147 36.1
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 3.3e-07 59.3 133 36.1
PGSC0003DMG400000470 Solanum tuberosum HOM05D030065 ORTHO05D005174 4.3e-07 58.9 59 50.8
BcaC01g04994 Brassica carinata HOM05D010012 ORTHO05D012171 5.6e-07 58.5 155 34.2
C03p31310 Brassica napus HOM05D010012 ORTHO05D012171 5.6e-07 58.5 155 34.2
BolC3t15480H Brassica oleracea HOM05D010012 ORTHO05D012171 5.6e-07 58.5 155 34.2
FAN05G2792 Fragaria x ananassa HOM05D018126 ORTHO05D020711 5.6e-07 58.5 85 44.7
FAN09G0198 Fragaria x ananassa HOM05D018126 ORTHO05D020711 5.6e-07 58.5 85 44.7
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 5.6e-07 58.5 84 51.2
BcaC02g11018 Brassica carinata HOM05D010012 ORTHO05D012171 7.4e-07 58.2 110 39.1
C04p22150 Brassica napus HOM05D010012 ORTHO05D012171 7.4e-07 58.2 110 39.1
BolC4t23735H Brassica oleracea HOM05D010012 ORTHO05D012171 7.4e-07 58.2 110 39.1
Sopen11g025730 Solanum pennellii HOM05D030065 ORTHO05D005174 7.4e-07 58.2 59 50.8
Thhalv10017378m.g Eutrema salsugineum HOM05D010012 ORTHO05D012171 1.3e-06 57.4 155 34.2
Phvul.008G100200 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 1.3e-06 57.4 173 35.8
AT5G59360 Arabidopsis thaliana HOM05D012305 ORTHO05D014046 1.6e-06 57.0 94 39.4
BcaB02g10207 Brassica carinata HOM05D010012 ORTHO05D012171 1.6e-06 57.0 82 42.7
FAN02G3432 Fragaria x ananassa HOM05D018126 ORTHO05D020711 1.6e-06 57.0 85 44.7
Sed0022895 Sechium edule HOM05D025677 ORTHO05D028978 1.6e-06 57.0 118 43.2
A03p26230 Brassica napus HOM05D010012 ORTHO05D012171 2.1e-06 56.6 82 48.8
BraA03t11837Z Brassica rapa HOM05D010012 ORTHO05D012171 2.1e-06 56.6 82 48.8
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 2.8e-06 56.2 163 30.1
Sed0016652 Sechium edule HOM05D023073 ORTHO05D005174 2.8e-06 56.2 84 42.9
A07p19320 Brassica napus HOM05D010012 ORTHO05D012171 3.7e-06 55.8 141 34.8
BraA07t29637Z Brassica rapa HOM05D010012 ORTHO05D012171 3.7e-06 55.8 141 34.8
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.7e-06 55.8 79 40.5
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 3.7e-06 55.8 43 65.1
FvH4_6g13950 Fragaria vesca HOM05D018126 ORTHO05D020711 3.7e-06 55.8 75 49.3
FAN14G4287 Fragaria x ananassa HOM05D018126 ORTHO05D020711 3.7e-06 55.8 75 49.3
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 3.7e-06 55.8 107 40.2
AT2G28870 Arabidopsis thaliana HOM05D010012 ORTHO05D012171 6.2e-06 55.1 166 31.3
FAN09G2724 Fragaria x ananassa HOM05D018126 ORTHO05D020711 6.2e-06 55.1 78 47.4
Psat3g141040 Pisum sativum HOM05D005967 ORTHO05D005174 6.2e-06 55.1 81 45.7
Sed0010435 Sechium edule HOM05D023073 ORTHO05D005174 6.2e-06 55.1 87 42.5
Gohir.A09G156500 Gossypium hirsutum HOM05D036294 ORTHO05D036268 8.1e-06 54.7 58 56.9


User provided reference genes

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