Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 4.3e-28 127.1 57 100.0
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 1.8e-26 121.7 57 94.7
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 2.4e-26 121.3 57 93.0
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 3.1e-26 120.9 57 91.2
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 3.4e-25 117.5 57 91.2
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 7.6e-25 116.3 57 89.5
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 1.0e-24 115.9 57 89.5
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.4e-23 112.1 57 91.2
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 1.4e-23 112.1 55 90.9
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 1.4e-23 112.1 57 87.7
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 1.4e-23 112.1 55 89.1
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.4e-23 112.1 57 89.5
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 1.9e-23 111.7 53 94.3
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 2.5e-23 111.3 55 87.3
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 2.5e-23 111.3 56 89.3
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 3.2e-23 110.9 57 89.5
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 3.2e-23 110.9 55 89.1
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 4.2e-23 110.5 55 87.3
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 4.2e-23 110.5 54 88.9
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 5.5e-23 110.2 54 88.9
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 5.5e-23 110.2 54 88.9
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 5.5e-23 110.2 54 88.9
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 5.5e-23 110.2 54 90.7
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 5.5e-23 110.2 57 86.0
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 9.3e-23 109.4 53 90.6
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 9.3e-23 109.4 54 87.0
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 1.2e-22 109.0 53 88.7
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 1.2e-22 109.0 54 87.0
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 1.2e-22 109.0 54 87.0
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.2e-22 109.0 55 87.3
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 1.6e-22 108.6 54 85.2
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 1.6e-22 108.6 54 87.0
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 1.6e-22 108.6 54 88.9
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 2.1e-22 108.2 55 89.1
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.1e-22 108.2 53 88.7
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 2.1e-22 108.2 55 89.1
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 2.7e-22 107.8 54 87.0
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.5e-22 107.5 55 85.5
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 4.6e-22 107.1 54 85.2
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 6.0e-22 106.7 53 86.8
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 7.9e-22 106.3 54 87.0
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 7.9e-22 106.3 54 87.0
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 7.9e-22 106.3 51 86.3
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 7.9e-22 106.3 55 87.3
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 7.9e-22 106.3 55 89.1
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 7.9e-22 106.3 52 88.5
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 1.0e-21 105.9 53 86.8
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.3e-21 105.5 55 85.5
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.3e-21 105.5 55 85.5
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.3e-21 105.5 53 88.7
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 85.5
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 3.0e-21 104.4 53 88.7
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 3.0e-21 104.4 52 90.4
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 3.0e-21 104.4 55 83.6
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 3.9e-21 104.0 55 83.6
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 3.9e-21 104.0 55 87.3
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 3.9e-21 104.0 55 85.5
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 3.9e-21 104.0 55 81.8
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 3.9e-21 104.0 53 84.9
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 5.1e-21 103.6 53 86.8
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 5.1e-21 103.6 55 85.5
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 6.7e-21 103.2 53 86.8
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 6.7e-21 103.2 55 85.5
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 6.7e-21 103.2 54 85.2
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 6.7e-21 103.2 55 83.6
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 8.7e-21 102.8 53 83.0
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 8.7e-21 102.8 54 85.2
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 8.7e-21 102.8 55 85.5
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 8.7e-21 102.8 55 85.5
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 1.1e-20 102.4 53 86.8
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 1.1e-20 102.4 54 83.3
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 1.9e-20 101.7 54 81.5
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 1.9e-20 101.7 55 83.6
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 2.5e-20 101.3 55 80.0
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 2.5e-20 101.3 55 83.6
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 2.5e-20 101.3 55 81.8
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 4.3e-20 100.5 54 79.6
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 5.7e-20 100.1 55 80.0
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 5.7e-20 100.1 55 81.8
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 7.4e-20 99.8 53 81.1
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 7.4e-20 99.8 53 81.1
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 7.4e-20 99.8 54 79.6
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 7.4e-20 99.8 54 79.6
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 9.7e-20 99.4 53 83.0
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 1.6e-19 98.6 55 78.2
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 1.6e-19 98.6 55 78.2
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 1.6e-19 98.6 54 77.8
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.2e-19 98.2 55 80.0
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.2e-19 98.2 55 80.0
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.2e-19 98.2 55 81.8
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 2.2e-19 98.2 55 78.2
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 2.2e-19 98.2 55 80.0
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.8e-19 97.8 53 83.0
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 3.7e-19 97.4 52 80.8
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 3.7e-19 97.4 55 78.2
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 3.7e-19 97.4 55 76.4
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 4.8e-19 97.1 54 74.1
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 6.3e-19 96.7 55 80.0
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 1.1e-18 95.9 53 79.2
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 1.4e-18 95.5 55 76.4
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 1.4e-18 95.5 54 74.1
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 1.4e-18 95.5 54 75.9
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 2.4e-18 94.7 55 76.4
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 2.4e-18 94.7 55 76.4
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 2.4e-18 94.7 55 76.4
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 2.4e-18 94.7 55 76.4
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 2.4e-18 94.7 55 76.4
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 3.1e-18 94.4 55 76.4
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 3.1e-18 94.4 55 74.5
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 3.1e-18 94.4 55 74.5
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 3.1e-18 94.4 55 74.5
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 4.1e-18 94.0 55 74.5
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 6.9e-18 93.2 55 74.5
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 1.2e-17 92.4 55 74.5
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 1.5e-17 92.0 55 72.7
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 2.0e-17 91.7 55 72.7
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 2.0e-17 91.7 55 72.7
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 2.0e-17 91.7 55 72.7
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 2.0e-17 91.7 55 72.7
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 2.6e-17 91.3 54 74.1
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 4.5e-17 90.5 52 75.0
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 1.0e-16 89.4 52 71.2
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 1.3e-16 89.0 90 54.4
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 9.3e-15 82.8 39 94.9
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 1.4e-13 79.0 39 82.1
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 6.7e-13 76.6 39 87.2
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 6.7e-13 76.6 39 82.1
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 2.5e-12 74.7 39 82.1
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 3.3e-12 74.3 39 82.1
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 4.3e-12 73.9 41 75.6
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 1.3e-11 72.4 39 82.1
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 1.7e-11 72.0 34 88.2
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 6.3e-11 70.1 44 68.2
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 6.3e-11 70.1 44 68.2
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.1e-10 69.3 53 54.7
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 1.1e-10 69.3 39 74.4
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 1.4e-10 68.9 39 74.4
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 3.1e-10 67.8 39 74.4
Sc21g0005590 Simmondsia chinensis HOM05D000500 ORTHO05D000367 2.6e-09 64.7 55 50.9
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.4e-09 64.3 53 56.6
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 3.4e-09 64.3 39 74.4
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 3.4e-09 64.3 39 74.4
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 3.4e-09 64.3 39 74.4
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 1.7e-08 62.0 39 71.8
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 3.8e-08 60.8 39 71.8
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 7.2e-07 56.6 30 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1086 Anthoceros agrestis HOM05D060648 ORTHO05D023521 7.9e-06 53.1 55 45.5


User provided reference genes

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