Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 9.7e-203 709.9 356 100.0
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 3.2e-177 625.2 356 88.5
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.2e-165 586.6 357 82.9
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 6.4e-162 574.3 354 80.2
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.9e-161 572.8 357 80.7
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 4.6e-160 568.2 354 79.1
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 7.3e-158 560.8 350 79.4
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 3.6e-157 558.5 354 78.8
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 1.1e-156 557.0 354 77.7
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.1e-156 557.0 349 78.8
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.1e-156 557.0 354 78.0
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.4e-156 555.8 363 78.2
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.8e-156 554.3 353 78.5
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.9e-156 553.9 353 78.2
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.5e-155 553.1 353 78.2
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.7e-154 549.7 353 78.5
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 2.2e-154 549.3 353 78.2
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 2.9e-154 548.9 353 77.1
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.1e-153 547.0 353 77.3
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.9e-153 546.2 349 78.2
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 2.4e-153 545.8 352 76.4
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 3.2e-153 545.4 348 80.5
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 7.1e-153 544.3 350 78.6
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.6e-152 543.1 352 75.9
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.1e-152 542.7 353 76.8
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.1e-152 542.7 353 76.5
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 2.1e-152 542.7 351 76.6
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 7.8e-152 540.8 352 75.0
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 2.3e-151 539.3 352 75.3
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.0e-151 538.9 352 75.6
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 3.9e-151 538.5 352 77.6
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 5.1e-151 538.1 360 75.6
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 8.7e-151 537.3 352 75.3
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.1e-150 537.0 344 77.6
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.5e-150 536.6 358 75.4
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.5e-150 536.6 353 76.8
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.5e-150 536.6 358 75.7
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 2.5e-150 535.8 358 76.3
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.5e-150 535.8 352 75.3
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 7.3e-150 534.3 349 77.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 2.1e-149 532.7 353 75.1
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.1e-149 532.7 348 77.3
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 3.6e-149 531.9 358 75.1
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 4.8e-149 531.6 358 74.9
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 4.8e-149 531.6 358 74.9
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 4.8e-149 531.6 358 74.9
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 8.1e-149 530.8 351 74.4
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.4e-148 530.0 358 74.9
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 2.4e-148 529.3 351 74.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 2.0e-147 526.2 352 74.4
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.4e-147 525.4 387 70.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 3.4e-147 525.4 346 75.7
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 3.4e-147 525.4 348 76.1
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 3.4e-147 525.4 348 76.1
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 7.6e-147 524.2 352 75.0
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.3e-146 523.5 352 75.0
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.7e-146 523.1 350 75.1
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.9e-146 521.5 350 74.9
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 6.4e-146 521.2 350 74.9
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 8.4e-146 520.8 355 74.6
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.4e-145 519.2 353 74.2
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.6e-144 516.5 350 75.7
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 4.6e-144 515.0 359 73.3
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 6.0e-144 514.6 345 76.2
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 7.9e-144 514.2 357 73.7
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.0e-143 513.8 345 73.9
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.7e-143 513.1 350 75.1
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 5.1e-143 511.5 342 76.6
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.5e-142 510.0 353 73.4
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.5e-142 510.0 349 73.1
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.6e-141 505.4 352 72.7
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 4.8e-141 505.0 349 72.5
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 3.1e-140 502.3 298 80.2
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.0e-139 499.6 376 68.1
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 4.5e-139 498.4 346 72.3
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 5.8e-139 498.0 366 68.3
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 5.8e-139 498.0 344 70.1
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 9.9e-139 497.3 348 72.7
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.7e-138 496.5 340 73.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.9e-138 495.7 341 71.3
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 8.4e-138 494.2 355 70.7
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.9e-137 493.0 346 72.0
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 3.5e-136 488.8 348 71.8
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.7e-135 484.2 348 72.4
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 8.7e-135 484.2 348 69.5
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.1e-134 483.8 341 72.1
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.7e-133 478.8 302 81.8
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 4.0e-132 475.3 344 73.8
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 3.4e-131 472.2 302 79.8
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 4.5e-131 471.9 340 68.2
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.1e-129 467.2 307 78.5
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 2.5e-129 466.1 379 65.2
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.1e-129 464.5 307 77.5
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.2e-128 463.8 371 65.5
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.3e-127 460.3 331 72.5
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.5e-126 456.8 389 63.5
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.3e-125 453.8 300 77.3
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.6e-125 453.4 297 73.1
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.8e-124 449.9 369 66.1
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 6.9e-124 448.0 301 72.1
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.9e-124 448.0 302 75.2
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.2e-123 447.2 314 72.0
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 5.8e-123 444.9 311 73.3
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 2.5e-121 439.5 330 68.5
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 7.9e-120 434.5 343 68.2
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.3e-119 433.7 277 75.1
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.1e-118 430.6 326 70.2
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 3.4e-115 419.1 297 71.7
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.5e-115 418.7 256 79.7
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 5.0e-114 415.2 288 72.9
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.5e-113 412.9 354 62.1
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 3.2e-113 412.5 399 59.9
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 7.9e-112 407.9 256 77.0
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.3e-109 400.6 296 67.9
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.8e-108 396.7 265 78.1
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 4.1e-108 395.6 306 66.0
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 3.3e-102 375.9 252 77.8
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 9.7e-102 374.4 266 72.9
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.7e-101 373.6 231 77.5
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 6.3e-101 371.7 254 76.4
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.0e-99 366.7 252 77.4
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.8e-98 362.5 342 55.8
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 6.5e-98 361.7 352 54.0
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 7.2e-97 358.2 309 63.8
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 9.7e-94 347.8 232 80.2
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.2e-91 340.9 342 52.6
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 9.4e-89 331.3 325 53.5
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.0e-87 326.2 222 74.8
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 3.7e-85 319.3 254 66.9
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 3.5e-83 312.8 276 55.4
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.5e-82 308.5 192 78.1
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.8e-79 300.4 233 69.1
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.0e-74 284.6 195 72.3
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.0e-71 274.6 316 45.9
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 2.9e-61 240.0 187 67.4
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.4e-60 236.9 166 74.1
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.9e-58 229.6 361 42.9
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 3.7e-53 213.0 184 65.2
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 6.2e-32 142.5 100 68.0
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-26 124.8 75 73.3
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 3.9e-26 123.2 75 72.0
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.1e-25 121.7 75 70.7
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.1e-25 121.7 76 72.4
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.1e-25 121.7 75 70.7
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 3.3e-25 120.2 120 58.3
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 3.6e-24 116.7 62 80.6
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-20 104.4 112 53.6
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 5.3e-07 59.7 55 58.2
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 5.3e-07 59.7 37 75.7


User provided reference genes

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