Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 0.0e+00 1399.4 743 100.0
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 0.0e+00 1109.0 746 79.0
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1087.4 755 76.3
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1079.7 755 75.8
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 752 75.1
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 5.1e-312 1074.7 752 75.1
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.0e-311 1073.2 755 74.3
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.0e-311 1072.8 755 74.0
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.5e-311 1071.6 755 74.2
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 7.2e-309 1063.5 759 73.8
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.6e-308 1062.4 819 70.9
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 4.0e-307 1057.7 759 73.6
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 7.0e-304 1047.0 795 70.7
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 9.2e-304 1046.6 756 73.9
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 2.3e-302 1042.0 755 72.7
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 6.6e-302 1040.4 757 72.7
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.8e-299 1032.3 754 72.5
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 1.8e-299 1032.3 758 72.4
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 9.8e-298 1026.5 750 74.3
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 1.3e-297 1026.2 751 71.9
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.7e-297 1025.8 751 71.9
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.2e-296 1021.5 751 72.0
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 7.3e-293 1010.4 761 71.2
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 4.1e-288 994.6 746 71.0
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 5.4e-288 994.2 760 70.9
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 9.2e-288 993.4 757 70.3
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.2e-282 976.5 719 71.6
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 2.0e-282 975.7 758 68.1
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 7.6e-282 973.8 723 72.1
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 6.4e-281 970.7 755 69.5
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 8.4e-281 970.3 752 68.4
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.6e-279 966.1 758 68.6
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 3.5e-279 964.9 744 67.7
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 3.0e-278 961.8 760 69.3
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 6.6e-278 960.7 760 69.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.9e-277 959.1 753 68.1
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.6e-276 956.1 745 67.4
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 3.1e-275 951.8 755 67.7
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 5.2e-275 951.0 753 67.1
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 8.9e-275 950.3 758 67.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 1.2e-274 949.9 754 67.5
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 7.6e-274 947.2 758 66.5
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 7.6e-274 947.2 754 67.5
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 2.9e-273 945.3 742 67.7
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 2.9e-273 945.3 745 67.2
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 3.8e-273 944.9 751 66.7
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 3.8e-273 944.9 779 67.3
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 8.4e-273 943.7 742 66.8
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 8.4e-273 943.7 742 66.8
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.1e-272 943.3 753 67.3
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 7.1e-272 940.6 747 66.9
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 1.2e-271 939.9 743 66.8
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 2.7e-271 938.7 745 66.8
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 2.7e-271 938.7 761 66.5
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 3.5e-271 938.3 755 66.1
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 6.6e-270 934.1 752 65.6
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.5e-269 932.9 745 66.7
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.5e-269 932.9 751 64.8
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 7.3e-269 930.6 752 65.4
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 7.3e-269 930.6 758 66.4
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 1.6e-268 929.5 752 66.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 2.4e-267 925.6 761 65.4
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.2e-266 923.3 755 65.3
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 7.6e-266 920.6 751 64.6
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 8.4e-265 917.1 779 63.9
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 8.4e-265 917.1 748 65.0
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 1.9e-264 916.0 758 66.2
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 5.4e-264 914.4 755 65.4
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 9.3e-264 913.7 779 64.4
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 1.2e-263 913.3 759 65.6
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.6e-263 912.9 765 64.8
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.3e-262 909.8 760 64.9
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.7e-262 909.4 757 64.5
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 6.6e-262 907.5 757 63.8
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 5.6e-261 904.4 788 62.8
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 9.6e-261 903.7 690 70.0
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 2.1e-260 902.5 748 65.4
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 3.4e-258 895.2 733 65.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 4.3e-253 878.2 761 63.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.3e-249 866.7 757 63.1
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 6.0e-247 857.8 745 62.1
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.0e-246 857.1 752 62.4
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 6.7e-246 854.4 851 55.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 7.4e-245 850.9 794 59.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 2.4e-243 845.9 755 60.8
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 4.1e-243 845.1 763 60.3
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.7e-241 839.7 762 60.4
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 5.7e-237 824.7 744 61.2
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 3.8e-225 785.4 752 56.5
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 6.7e-222 774.6 664 63.0
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.7e-220 770.0 758 55.5
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 5.0e-217 758.4 754 59.9
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-210 737.3 597 67.5
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 2.7e-202 709.5 753 54.1
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.9e-200 703.4 608 63.0
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 3.2e-200 702.6 797 49.1
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 8.6e-177 624.8 623 57.0
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 9.5e-168 594.7 532 61.7
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 5.6e-152 542.3 706 42.8
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 7.9e-146 521.9 757 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.3e-145 521.2 687 43.2
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 3.5e-138 496.5 488 57.8
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.3e-135 488.0 408 66.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 4.1e-126 456.4 795 36.7
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 3.9e-121 439.9 776 37.2
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.8e-119 433.7 740 36.9
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 6.5e-116 422.5 311 66.9
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.8e-111 407.1 271 74.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.7e-106 389.8 257 74.3
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.3e-96 357.1 402 52.5
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.3e-95 355.1 312 61.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 8.5e-92 342.4 262 62.2
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.3e-79 302.0 244 70.9
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 9.8e-72 275.8 219 62.6
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.7e-53 214.5 351 42.2
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.4e-48 197.2 163 63.2
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 2.2e-47 194.9 220 51.4
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.5e-43 181.4 741 23.8
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 9.9e-40 169.5 124 71.0
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.4e-38 165.6 115 72.2
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 8.1e-34 149.8 93 76.3
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 8.4e-31 139.8 101 70.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.6e-29 135.6 216 42.1
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 3.7e-26 124.4 111 58.6
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 3.7e-26 124.4 69 79.7
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 3.7e-26 124.4 69 79.7
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 4.9e-23 114.0 749 20.4
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 2.4e-22 111.7 69 75.4
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 9.6e-19 99.8 86 61.6
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.7e-18 97.8 123 44.7
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 8.4e-15 86.7 185 37.3
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 3.9e-12 77.8 68 63.2
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.1e-09 69.7 226 31.4
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.1e-09 68.2 179 29.6
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 5.9e-08 63.9 47 66.0


User provided reference genes

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