Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 0.0e+00 1323.9 694 100.0
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 8.9e-184 647.9 746 50.9
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 7.5e-167 591.7 758 48.5
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 4.3e-162 575.9 815 45.2
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 7.3e-162 575.1 742 47.8
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.5e-159 567.4 763 46.7
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 9.2e-157 558.1 620 53.2
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 1.2e-156 557.8 645 50.2
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 6.0e-156 555.4 751 46.9
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.0e-155 554.7 751 46.6
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.3e-155 553.5 714 46.6
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.1e-152 544.7 765 46.4
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 3.1e-152 543.1 727 47.2
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 2.9e-150 536.6 726 46.6
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 6.0e-148 528.9 633 49.8
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 3.6e-145 519.6 740 45.7
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 2.0e-143 513.8 724 44.1
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.6e-140 504.2 720 44.4
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 3.0e-139 500.0 714 43.4
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 7.6e-135 485.3 692 43.2
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.1e-133 481.5 623 49.3
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 5.6e-130 469.2 539 51.8
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.8e-128 464.2 750 40.9
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.0e-127 460.7 496 54.6
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 2.2e-126 457.2 705 42.0
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 9.3e-125 451.8 727 42.1
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 6.0e-124 449.1 334 69.5
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.8e-123 447.6 671 43.4
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 3.9e-123 446.4 719 41.4
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 8.7e-123 445.3 327 68.5
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.5e-122 444.5 332 68.4
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.5e-122 444.5 326 69.6
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.3e-122 443.0 334 68.9
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 2.2e-121 440.7 744 40.9
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 3.7e-121 439.9 327 68.5
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.1e-120 438.3 787 39.1
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.4e-120 438.0 608 45.1
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.4e-120 438.0 766 38.3
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 9.0e-120 435.3 327 67.9
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 9.0e-120 435.3 512 49.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 9.0e-120 435.3 406 58.6
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.5e-119 434.5 790 38.0
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 2.0e-119 434.1 349 65.6
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 2.0e-119 434.1 336 67.0
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 2.0e-119 434.1 336 67.0
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 2.6e-119 433.7 368 59.5
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 2.6e-119 433.7 327 67.6
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 4.5e-119 433.0 355 61.4
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 4.5e-119 433.0 748 39.8
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.3e-118 431.4 331 64.7
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 1.7e-118 431.0 581 44.9
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.9e-118 430.3 327 67.0
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.8e-118 429.9 327 67.3
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 5.0e-118 429.5 336 64.6
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.2e-117 426.8 323 68.1
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 5.5e-117 426.0 741 40.6
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 5.5e-117 426.0 738 41.2
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 7.2e-117 425.6 786 38.3
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.2e-116 424.9 334 64.1
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.2e-116 424.9 552 45.8
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.6e-116 424.5 729 40.5
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 4.6e-116 422.9 334 65.0
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 6.1e-116 422.5 330 65.2
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 1.4e-115 421.4 355 59.2
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 6.7e-115 419.1 331 64.4
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 2.2e-113 414.1 331 65.0
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 2.8e-113 413.7 337 62.0
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 4.8e-113 412.9 392 58.4
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 4.8e-113 412.9 423 53.2
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.8e-112 411.0 693 39.8
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 1.8e-112 411.0 667 41.5
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.0e-111 407.5 738 39.6
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 2.6e-111 407.1 729 39.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 1.3e-110 404.8 379 55.9
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 3.8e-110 403.3 336 60.1
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.5e-109 400.6 721 39.8
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 1.2e-108 398.3 453 50.6
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 6.7e-107 392.5 436 51.6
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 9.7e-106 388.7 570 42.1
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.7e-105 386.7 341 59.2
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 6.3e-105 386.0 341 59.2
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 6.3e-105 386.0 341 59.2
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 8.2e-105 385.6 334 59.9
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.1e-104 385.2 311 61.7
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.4e-104 384.0 363 56.7
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 7.0e-104 382.5 331 60.1
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 4.5e-103 379.8 351 56.1
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.0e-102 378.6 334 59.0
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 2.9e-102 377.1 389 53.2
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.9e-102 377.1 343 58.0
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 2.5e-101 374.0 342 57.6
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.2e-100 371.7 818 34.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.6e-100 371.3 505 45.7
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 6.1e-100 369.4 427 48.9
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.4e-99 368.2 340 56.5
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.3e-99 367.5 691 37.0
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 7.4e-98 362.5 427 48.7
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 9.7e-98 362.1 307 59.6
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 9.7e-98 362.1 635 39.2
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 9.7e-98 362.1 635 39.2
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.3e-97 361.7 635 39.2
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.7e-97 361.3 307 60.3
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.1e-96 357.1 366 53.0
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 4.1e-96 356.7 366 53.0
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.6e-95 354.8 691 36.3
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.5e-95 353.2 331 58.0
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 4.2e-85 320.1 238 70.2
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.1e-72 278.9 205 67.8
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 5.4e-72 276.6 619 36.8
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 2.7e-71 274.2 204 67.6
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.7e-65 255.0 341 39.0
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.2e-65 254.6 300 47.7
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 2.0e-63 248.1 271 46.1
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 1.1e-59 235.7 490 33.9
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.4e-59 235.3 236 50.4
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 2.0e-58 231.5 537 34.6
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 9.2e-56 222.6 311 42.1
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 8.4e-41 172.9 204 49.0
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 7.3e-37 159.8 129 65.1
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.0e-35 154.1 113 63.7
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 2.0e-34 151.8 146 56.8
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 1.9e-32 145.2 137 57.7
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 4.3e-29 134.0 119 57.1
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 3.2e-24 117.9 277 28.5
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 6.0e-23 113.6 128 44.5
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.3e-22 111.7 107 57.0
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 3.9e-22 110.9 84 61.9
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 3.8e-17 94.4 253 27.3
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.4e-16 92.4 83 56.6
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 5.5e-16 90.5 59 71.2
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 1.9e-13 82.0 54 72.2
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 1.9e-13 82.0 54 72.2
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 6.2e-12 77.0 56 66.1
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.9e-08 65.5 74 48.6
Cfa010667 Carpinus fangiana HOM05D001360 ORTHO05D001231 7.1e-08 63.5 77 49.4
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 4.6e-07 60.8 57 63.2


User provided reference genes

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