Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G021400 Manihot esculenta HOM05D006634 ORTHO05D008282 1.3e-39 166.0 86 100.0
Manes.11G145100 Manihot esculenta HOM05D006634 ORTHO05D008282 1.9e-35 152.1 86 90.7
Potri.004G210800 Populus trichocarpa HOM05D006634 ORTHO05D008282 8.8e-25 116.7 82 74.4
Sabra04G0142400 Salix brachista HOM05D006634 ORTHO05D008282 2.6e-24 115.2 86 72.1
Gohir.A05G103000 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.2e-23 112.1 84 65.5
Gorai.009G107000 Gossypium raimondii HOM05D006634 ORTHO05D008282 2.2e-23 112.1 84 66.7
Duzib150G1350 Durio zibethinus HOM05D006634 ORTHO05D008282 1.4e-22 109.4 84 65.5
Gohir.D05G102700 Gossypium hirsutum HOM05D006634 ORTHO05D008282 1.4e-22 109.4 84 65.5
Atru.chr3.3630 Acer truncatum HOM05D006634 ORTHO05D008282 5.3e-22 107.5 84 64.3
Duzib168G0710 Durio zibethinus HOM05D006634 ORTHO05D008282 5.3e-22 107.5 84 63.1
CiPaw.13G113000 Carya illinoinensis HOM05D006634 ORTHO05D008282 1.6e-21 105.9 83 63.9
Prupe.6G101400 Prunus persica HOM05D006634 ORTHO05D008282 5.9e-21 104.0 82 63.4
Thecc.09G340600 Theobroma cacao HOM05D006634 ORTHO05D008282 5.9e-21 104.0 77 66.2
RcHm_v2.0_Chr5g0059081 Rosa chinensis HOM05D006634 ORTHO05D008282 1.0e-20 103.2 82 61.0
Dinv32744 Davidia involucrata HOM05D006634 ORTHO05D008282 1.7e-20 102.4 83 59.0
Aa31LG5G7790 Aethionema arabicum HOM05D006634 ORTHO05D008282 5.0e-20 100.9 84 63.1
Sp4g11250 Schrenkiella parvula HOM05D006634 ORTHO05D008282 8.5e-20 100.1 84 60.7
CANSAT54G0287 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-19 99.8 82 61.0
CANSAT54G1094 Cannabis sativa HOM05D006634 ORTHO05D008282 1.1e-19 99.8 82 61.0
GSVIVG01025186001 Vitis vinifera HOM05D006634 ORTHO05D008282 1.5e-19 99.4 83 61.4
AL4G21590 Arabidopsis lyrata HOM05D006634 ORTHO05D008282 1.9e-19 99.0 84 59.5
Carub.0004s0938 Capsella rubella HOM05D006634 ORTHO05D008282 1.9e-19 99.0 84 59.5
CARHR121380 Cardamine hirsuta HOM05D006634 ORTHO05D008282 1.9e-19 99.0 84 60.7
Gohir.A08G197800 Gossypium hirsutum HOM05D006634 ORTHO05D008282 2.5e-19 98.6 84 59.5
Gorai.004G228800 Gossypium raimondii HOM05D006634 ORTHO05D008282 2.5e-19 98.6 84 59.5
CANSAT54G1506 Cannabis sativa HOM05D006634 ORTHO05D008282 4.2e-19 97.8 83 61.4
Cpa.g.sc216.10 Carica papaya HOM05D006634 ORTHO05D008282 7.2e-19 97.1 75 66.7
BcaNung07072 Brassica carinata HOM05D006634 ORTHO05D008282 1.2e-18 96.3 84 57.1
BolC4t23789H Brassica oleracea HOM05D006634 ORTHO05D008282 1.2e-18 96.3 84 58.3
THA.LOC104800608 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 1.2e-18 96.3 84 58.3
CSS0031934 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 56.6
CANSAT54G0497 Cannabis sativa HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 60.2
CANSAT54G1359 Cannabis sativa HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 60.2
CANSAT54G1657 Cannabis sativa HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 60.2
CANSAT54G2640 Cannabis sativa HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 60.2
CANSAT54G2841 Cannabis sativa HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 60.2
PGR102G2188 Punica granatum HOM05D006634 ORTHO05D008282 1.6e-18 95.9 83 56.6
Eucgr.B02497 Eucalyptus grandis HOM05D006634 ORTHO05D008282 2.7e-18 95.1 83 60.2
Gohir.D08G215200 Gossypium hirsutum HOM05D006634 ORTHO05D008282 3.6e-18 94.7 84 58.3
Sed0017465 Sechium edule HOM05D006634 ORTHO05D008282 3.6e-18 94.7 83 57.8
AT2G28430 Arabidopsis thaliana HOM05D006634 ORTHO05D008282 4.7e-18 94.4 84 56.0
BraA07t29605Z Brassica rapa HOM05D006634 ORTHO05D008282 4.7e-18 94.4 84 57.1
A07p19000 Brassica napus HOM05D006634 ORTHO05D008282 6.1e-18 94.0 84 57.1
Glyma.12G067600 Glycine max HOM05D006634 ORTHO05D008282 6.1e-18 94.0 83 61.4
Nn2g10789 Nelumbo nucifera HOM05D006634 ORTHO05D008282 6.1e-18 94.0 83 59.0
Ciclev10029701m.g Citrus clementina HOM05D006634 ORTHO05D008282 1.0e-17 93.2 83 59.0
Glyma.11G146700 Glycine max HOM05D006634 ORTHO05D008282 1.0e-17 93.2 83 61.4
Lalb_Chr19g0137281 Lupinus albus HOM05D006634 ORTHO05D008282 1.4e-17 92.8 83 60.2
THA.LOC104826362 Tarenaya hassleriana HOM05D006634 ORTHO05D008282 1.4e-17 92.8 88 60.2
CSS0041274 Camellia sinensis var. sinensis HOM05D006634 ORTHO05D008282 1.8e-17 92.4 83 57.8
TWI79G0418 Tripterygium wilfordii HOM05D006634 ORTHO05D008282 1.8e-17 92.4 83 61.4
C04p22950 Brassica napus HOM05D006634 ORTHO05D008282 3.0e-17 91.7 85 57.6
BraA04t17721Z Brassica rapa HOM05D006634 ORTHO05D008282 3.0e-17 91.7 80 53.8
CDE07G0066 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 3.0e-17 91.7 83 60.2
Thhalv10017488m.g Eutrema salsugineum HOM05D006634 ORTHO05D008282 4.0e-17 91.3 85 57.6
MD03G1117700 Malus domestica HOM05D006634 ORTHO05D008282 5.2e-17 90.9 82 57.3
BcaB06g28214 Brassica carinata HOM05D006634 ORTHO05D008282 6.8e-17 90.5 84 57.1
CDE06G1545 Ceratophyllum demersum HOM05D006634 ORTHO05D008282 6.8e-17 90.5 83 59.0
BolC4t27285H Brassica oleracea HOM05D006634 ORTHO05D008282 8.8e-17 90.1 80 53.8
Phvul.011G079100 Phaseolus vulgaris HOM05D006634 ORTHO05D008282 8.8e-17 90.1 83 59.0
TPR.G15540 Trifolium pratense HOM05D006634 ORTHO05D008282 4.4e-16 87.8 83 59.0
FAN21G3892 Fragaria x ananassa HOM05D006634 ORTHO05D008282 5.7e-16 87.4 82 53.7
Lj3g0007397 Lotus japonicus HOM05D006634 ORTHO05D008282 7.5e-16 87.0 83 57.8
MD11G1136000 Malus domestica HOM05D006634 ORTHO05D008282 7.5e-16 87.0 82 56.1
DCAR_018812 Daucus carota HOM05D006634 ORTHO05D008282 9.8e-16 86.7 79 54.4
Psat7g225160 Pisum sativum HOM05D006634 ORTHO05D008282 9.8e-16 86.7 83 57.8
MELO3C020691.2 Cucumis melo HOM05D006634 ORTHO05D008282 1.3e-15 86.3 84 52.4
Actinidia03728 Actinidia chinensis HOM05D006634 ORTHO05D008282 1.7e-15 85.9 83 54.2
CsaV3_1G033740 Cucumis sativus L. HOM05D006634 ORTHO05D008282 2.8e-15 85.1 84 51.2
arahy.Tifrunner.gnm1.ann1.RYN47D Arachis hypogaea HOM05D006634 ORTHO05D008282 3.7e-15 84.7 83 55.4
Rhsim01G0216700 Rhododendron simsii HOM05D006634 ORTHO05D008282 3.7e-15 84.7 84 56.0
ClCG03G001830 Citrullus lanatus HOM05D006634 ORTHO05D008282 6.3e-15 84.0 83 53.0
Nitab4.5_0000650g0190 Nicotiana tabacum HOM05D006634 ORTHO05D008282 6.3e-15 84.0 83 55.4
FvH4_3g32290 Fragaria vesca HOM05D006634 ORTHO05D008282 8.3e-15 83.6 82 52.4
FAN11G2087 Fragaria x ananassa HOM05D006634 ORTHO05D008282 8.3e-15 83.6 82 52.4
Medtr4g459450 Medicago truncatula HOM05D006634 ORTHO05D008282 8.3e-15 83.6 83 55.4
unitig_21.g20301 Utricularia gibba HOM05D006634 ORTHO05D008282 1.8e-14 82.4 83 53.0
vmacro14436 Vaccinium macrocarpon HOM05D006634 ORTHO05D008282 1.8e-14 82.4 84 54.8
Lsat_1_v5_gn_2_98520 Lactuca sativa HOM05D006634 ORTHO05D008282 2.4e-14 82.0 84 56.0
SalBow3G1265 Salvia bowleyana HOM05D006634 ORTHO05D008282 3.1e-14 81.6 83 54.2
HanXRQChr02g0031651 Helianthus annuus HOM05D006634 ORTHO05D008282 4.1e-14 81.3 84 54.8
arahy.Tifrunner.gnm1.ann1.8AEA4E Arachis hypogaea HOM05D006634 ORTHO05D008282 5.4e-14 80.9 88 51.1
AUR62039638 Chenopodium quinoa HOM05D006634 ORTHO05D008282 5.4e-14 80.9 85 51.8
Hma1.2p1_0058F.1_g032540 Hydrangea macrophylla HOM05D006634 ORTHO05D008282 5.4e-14 80.9 83 54.2
FAN25G2760 Fragaria x ananassa HOM05D006634 ORTHO05D008282 7.0e-14 80.5 81 48.1
AUR62024980 Chenopodium quinoa HOM05D006634 ORTHO05D008282 9.1e-14 80.1 83 53.0
ECA238G2380 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.6e-13 79.3 84 48.8
Oeu002870.2 Olea europaea HOM05D006634 ORTHO05D008282 2.7e-13 78.6 85 50.6
Lalb_Chr03g0027351 Lupinus albus HOM05D006634 ORTHO05D008282 5.9e-13 77.4 81 55.6
Sopen11g028130 Solanum pennellii HOM05D006634 ORTHO05D008282 5.9e-13 77.4 83 50.6
FAN16G1798 Fragaria x ananassa HOM05D006634 ORTHO05D008282 1.0e-12 76.6 75 50.7
Solyc11g069410.2 Solanum lycopersicum HOM05D006634 ORTHO05D008282 1.0e-12 76.6 83 50.6
ECA248G3376 Erigeron canadensis HOM05D006634 ORTHO05D008282 1.3e-12 76.3 86 50.0
HanXRQChr14g0452861 Helianthus annuus HOM05D006634 ORTHO05D008282 1.7e-12 75.9 83 49.4
Peaxi162Scf00270g00818 Petunia axillaris HOM05D006634 ORTHO05D008282 2.5e-11 72.0 85 50.6
Aqoxy2G01632 Aquilegia oxysepala HOM05D006634 ORTHO05D008282 4.2e-11 71.2 82 47.6
Actinidia25419 Actinidia chinensis HOM05D006634 ORTHO05D008282 6.8e-09 63.9 71 47.9
Zm00001eb221580 Zea mays HOM05D006634 ORTHO05D008282 6.8e-09 63.9 85 47.1
HPP92_022576 Vanilla planifolia HOM05D006634 ORTHO05D008282 2.6e-08 62.0 40 80.0
MBI10_g13399_MAGBIO Magnolia biondii HOM05D006634 ORTHO05D008282 5.7e-08 60.8 52 59.6
Zm00001eb045570 Zea mays HOM05D006634 ORTHO05D008282 9.8e-08 60.1 85 44.7
Sed0015282 Sechium edule HOM05D006634 ORTHO05D008282 3.7e-07 58.2 83 39.8
Lj1A192T37 Lonicera japonica HOM05D006634 ORTHO05D008282 6.3e-07 57.4 41 70.7
Os10g0481400 Oryza sativa ssp. japonica HOM05D006634 ORTHO05D008282 6.3e-07 57.4 86 46.5
PGSC0003DMG400008051 Solanum tuberosum HOM05D006634 ORTHO05D008282 6.3e-07 57.4 82 43.9
QL01p022236 Quercus lobata HOM05D006634 ORTHO05D008282 8.3e-07 57.0 172 29.1
Haze_23828 Corylus avellana HOM05D006634 ORTHO05D008282 1.4e-06 56.2 85 41.2
SHI06100 Sapria himalayana HOM05D006634 ORTHO05D008282 2.4e-06 55.5 63 50.8
Actinidia20457 Actinidia chinensis HOM05D006634 ORTHO05D008282 7.0e-06 53.9 48 60.4
Nitab4.5_0014490g0010 Nicotiana tabacum HOM05D006634 ORTHO05D008282 7.0e-06 53.9 43 62.8


User provided reference genes

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