Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.7e-91 339.3 175 100.0
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.3e-38 163.7 118 74.6
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 7.0e-37 157.9 144 57.6
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 9.2e-37 157.5 133 60.2
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 5.9e-36 154.8 129 61.2
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 5.9e-36 154.8 136 64.0
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.3e-35 153.7 138 59.4
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 6.6e-35 151.4 137 58.4
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.5e-34 150.2 138 57.2
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.9e-34 149.8 129 62.8
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.5e-34 149.4 163 51.5
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.2e-33 147.1 144 56.2
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.4e-32 143.7 144 56.9
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 6.8e-32 141.4 131 56.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.3e-30 137.1 139 57.6
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.3e-30 137.1 151 51.7
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 3.7e-30 135.6 141 53.9
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.9e-30 135.2 139 54.0
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.1e-29 134.0 131 55.7
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.4e-29 133.7 129 55.0
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.4e-29 132.9 131 54.2
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.4e-29 132.9 131 54.2
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.4e-29 132.9 132 54.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.4e-29 132.9 141 55.3
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.1e-29 132.1 131 54.2
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.4e-29 131.7 139 52.5
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 9.2e-29 131.0 125 54.4
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.2e-29 131.0 139 53.2
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 9.2e-29 131.0 141 53.9
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-28 130.6 131 55.7
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.2e-28 130.6 128 57.8
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-28 129.8 131 53.4
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.6e-28 128.6 128 53.9
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 7.8e-28 127.9 131 52.7
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 7.8e-28 127.9 128 50.8
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.6e-27 124.8 128 52.3
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.6e-27 124.8 125 52.0
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 8.6e-27 124.4 128 51.6
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 8.6e-27 124.4 125 52.8
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.5e-26 122.9 134 53.0
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.5e-26 122.9 151 49.7
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.3e-26 122.5 131 51.1
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 9.5e-26 120.9 133 46.6
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.2e-25 120.6 140 52.9
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.6e-25 120.2 132 50.0
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.1e-25 119.8 138 50.0
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.6e-25 119.0 130 53.8
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 4.7e-25 118.6 137 48.2
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 4.7e-25 118.6 132 53.0
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.4e-24 117.1 144 47.9
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.4e-24 117.1 127 52.8
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.8e-24 116.7 137 47.4
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.8e-24 116.7 113 55.8
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 3.1e-24 115.9 129 54.3
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 4.0e-24 115.5 139 48.2
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 5.2e-24 115.2 134 48.5
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 5.2e-24 115.2 129 50.4
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.0e-23 113.2 120 55.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.0e-23 113.2 123 52.8
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 2.6e-23 112.8 117 53.8
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.4e-23 112.5 137 44.5
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 7.5e-23 111.3 137 47.4
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.2e-22 109.8 128 53.9
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.2e-22 109.8 113 49.6
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.2e-22 109.8 130 50.8
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.2e-22 109.8 122 50.0
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 4.9e-22 108.6 135 40.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 8.3e-22 107.8 136 47.8
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.4e-21 107.1 129 45.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.9e-21 106.7 134 47.8
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 2.4e-21 106.3 147 43.5
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 4.1e-21 105.5 133 41.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 5.4e-21 105.1 147 42.9
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 7.1e-21 104.8 125 46.4
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 7.1e-21 104.8 100 54.0
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.2e-20 104.0 135 47.4
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.6e-20 103.6 140 49.3
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 1.6e-20 103.6 133 45.9
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.1e-20 103.2 104 53.8
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 7.8e-20 101.3 142 43.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.0e-19 100.9 144 45.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 3.9e-19 99.0 124 46.8
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 5.1e-19 98.6 118 54.2
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 6.6e-19 98.2 134 39.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 8.6e-19 97.8 134 39.6
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 8.6e-19 97.8 134 38.8
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-18 97.4 135 42.2
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.5e-18 97.1 138 38.4
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-18 97.1 118 53.4
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.3e-18 95.9 116 51.7
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.3e-18 95.9 116 48.3
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.3e-18 95.9 116 48.3
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 3.3e-18 95.9 115 53.9
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 3.3e-18 95.9 130 47.7
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 4.3e-18 95.5 136 43.4
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.2e-17 94.0 117 51.3
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.6e-17 93.6 116 50.9
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.6e-17 93.6 138 39.9
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.6e-17 93.6 139 39.6
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.6e-17 93.6 111 51.4
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.8e-17 92.8 116 50.0
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 2.8e-17 92.8 116 48.3
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.1e-17 91.3 133 39.8
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-16 90.9 116 46.6
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.1e-16 90.9 116 50.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.1e-16 90.9 116 46.6
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.1e-16 90.9 112 50.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.8e-16 90.1 112 51.8
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.8e-16 90.1 119 51.3
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 1.8e-16 90.1 119 47.1
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 2.3e-16 89.7 116 46.6
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 2.3e-16 89.7 116 46.6
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 3.1e-16 89.4 116 45.7
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.1e-13 80.9 114 44.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.5e-12 75.9 120 37.5
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.0e-12 75.1 149 38.3
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.3e-11 73.9 105 46.7
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.9e-11 72.4 117 41.0
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 3.9e-11 72.4 140 33.6
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 3.9e-11 72.4 140 33.6
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.9e-11 72.4 120 40.0
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 8.6e-11 71.2 132 37.9
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 5.6e-10 68.6 124 40.3
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 7.3e-10 68.2 128 32.8
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.6e-09 67.0 140 35.7
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 2.8e-09 66.2 139 34.5
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 3.6e-09 65.9 139 36.0
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-08 64.3 138 33.3
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 1.8e-08 63.5 130 36.2
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 3.1e-08 62.8 134 35.8
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 6.8e-08 61.6 130 33.8
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 8.9e-08 61.2 130 35.4
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.5e-07 60.5 139 32.4
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 2.0e-07 60.1 130 34.6
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 5.8e-07 58.5 140 33.6
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 1.3e-06 57.4 143 30.8
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 2.2e-06 56.6 83 42.2


User provided reference genes

Program Settings