Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G017300 Manihot esculenta HOM05D008179 ORTHO05D009362 7.1e-220 766.9 378 100.0
Manes.04G017200 Manihot esculenta HOM05D008179 ORTHO05D009362 5.3e-207 724.2 378 94.4
Manes.11G148800 Manihot esculenta HOM05D008179 ORTHO05D009362 8.5e-80 301.6 363 48.8
Lj1C1222T5 Lonicera japonica HOM05D008179 ORTHO05D009362 1.2e-38 164.9 361 33.2
QL93p0073_1249 Quercus lobata HOM05D008179 ORTHO05D009362 3.6e-38 163.3 359 31.8
Dinv18943 Davidia involucrata HOM05D008179 ORTHO05D009362 1.1e-37 161.8 325 35.4
TAR624G0619 Trochodendron aralioides HOM05D008179 ORTHO05D009362 1.9e-34 151.0 352 30.4
Lj1C1222G5 Lonicera japonica HOM05D008179 ORTHO05D009362 3.5e-33 146.7 337 30.0
Hma1.2p1_1682F.1_g297310 Hydrangea macrophylla HOM05D008179 ORTHO05D009362 2.3e-32 144.1 337 30.0
Prupe.4G112200 Prunus persica HOM05D008179 ORTHO05D009362 3.0e-32 143.7 350 32.0
QL05p077156 Quercus lobata HOM05D008179 ORTHO05D009362 4.3e-31 139.8 357 29.1
MD10G1212400 Malus domestica HOM05D008179 ORTHO05D009362 2.1e-30 137.5 367 30.5
Prupe.4G130300 Prunus persica HOM05D008179 ORTHO05D009362 2.1e-30 137.5 322 30.7
Oeu062972.1 Olea europaea HOM05D008179 ORTHO05D009362 1.1e-29 135.2 346 30.9
FAN14G5443 Fragaria x ananassa HOM05D008179 ORTHO05D009362 1.4e-29 134.8 355 29.6
RcHm_v2.0_Chr5g0021181 Rosa chinensis HOM05D008179 ORTHO05D009362 1.4e-29 134.8 345 30.4
DCAR_008110 Daucus carota HOM05D008179 ORTHO05D009362 8.9e-29 132.1 353 29.5
Prupe.4G219900 Prunus persica HOM05D008179 ORTHO05D009362 1.2e-28 131.7 284 32.4
RcHm_v2.0_Chr3g0478691 Rosa chinensis HOM05D008179 ORTHO05D009362 5.8e-28 129.4 350 28.9
FAN15G0940 Fragaria x ananassa HOM05D008179 ORTHO05D009362 2.4e-26 124.0 343 31.2
Prupe.4G220100 Prunus persica HOM05D008179 ORTHO05D009362 2.4e-26 124.0 365 28.8
Prupe.4G130000 Prunus persica HOM05D008179 ORTHO05D009362 4.1e-26 123.2 350 29.1
DCAR_008113 Daucus carota HOM05D008179 ORTHO05D009362 2.1e-25 120.9 353 28.9
RcHm_v2.0_Chr3g0479021 Rosa chinensis HOM05D008179 ORTHO05D009362 3.9e-24 116.7 282 33.7
MD05G1336000 Malus domestica HOM05D008179 ORTHO05D009362 6.6e-24 115.9 354 27.1
SalBow8G3222 Salvia bowleyana HOM05D008179 ORTHO05D009362 6.6e-24 115.9 331 27.8
Dinv18942 Davidia involucrata HOM05D008179 ORTHO05D009362 1.1e-23 115.2 319 30.4
RcHm_v2.0_Chr5g0004511 Rosa chinensis HOM05D008179 ORTHO05D009362 1.1e-23 115.2 345 29.6
Prupe.4G219800 Prunus persica HOM05D008179 ORTHO05D009362 5.6e-23 112.8 358 27.9
MD10G1311600 Malus domestica HOM05D008179 ORTHO05D009362 2.8e-22 110.5 354 26.6
FAN14G0841 Fragaria x ananassa HOM05D008179 ORTHO05D009362 4.7e-22 109.8 290 31.4
MD05G1336100 Malus domestica HOM05D008179 ORTHO05D009362 4.7e-22 109.8 363 25.9
FvH4_6g21740 Fragaria vesca HOM05D008179 ORTHO05D009362 3.1e-21 107.1 290 31.0
DCAR_008111 Daucus carota HOM05D008179 ORTHO05D009362 2.6e-20 104.0 350 27.1
Dinv17850 Davidia involucrata HOM05D008179 ORTHO05D009362 9.9e-20 102.1 346 27.2
RcHm_v2.0_Chr5g0019881 Rosa chinensis HOM05D008179 ORTHO05D009362 3.2e-18 97.1 322 28.3
FAN05G4853 Fragaria x ananassa HOM05D008179 ORTHO05D009362 5.4e-18 96.3 269 31.2
FAN02G3878 Fragaria x ananassa HOM05D008179 ORTHO05D009362 2.7e-17 94.0 275 29.5
Hma1.2p1_1682F.1_g297290 Hydrangea macrophylla HOM05D008179 ORTHO05D009362 3.5e-17 93.6 211 34.6
SGA_v2.0_scaffold7G03894 Striga asiatica HOM05D008179 ORTHO05D009362 2.3e-16 90.9 341 25.2
FvH4_2g03910 Fragaria vesca HOM05D008179 ORTHO05D009362 9.6e-15 85.5 212 29.7
CAN.G958.3 Capsicum annuum HOM05D009034 ORTHO05D009362 1.1e-13 82.0 332 25.9
Nitab4.5_0011228g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 2.4e-13 80.9 284 28.5
Sopen01g051920 Solanum pennellii HOM05D009034 ORTHO05D009362 2.4e-13 80.9 330 28.2
Nitab4.5_0003526g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 3.1e-13 80.5 330 26.7
FvH4_6g24450 Fragaria vesca HOM05D008179 ORTHO05D009362 5.2e-13 79.7 333 25.2
CAN.G696.2 Capsicum annuum HOM05D009034 ORTHO05D009362 9.0e-13 79.0 292 26.0
FAN25G2419 Fragaria x ananassa HOM05D008179 ORTHO05D009362 9.0e-13 79.0 288 26.7
DCAR_008112 Daucus carota HOM05D008179 ORTHO05D009362 3.4e-12 77.0 218 29.8
Sopen01g052330 Solanum pennellii HOM05D009034 ORTHO05D009362 3.4e-12 77.0 346 25.7
DCAR_028233 Daucus carota HOM05D008179 ORTHO05D009362 1.7e-11 74.7 264 26.9
Peaxi162Scf00016g00054 Petunia axillaris HOM05D009034 ORTHO05D009362 2.9e-11 73.9 295 28.1
PGSC0003DMG400044507 Solanum tuberosum HOM05D009034 ORTHO05D009362 2.9e-11 73.9 306 26.1
TAR624G0935 Trochodendron aralioides HOM05D008179 ORTHO05D009362 1.4e-10 71.6 107 34.6
Nitab4.5_0009524g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 3.2e-10 70.5 276 29.0
PGSC0003DMG400036424 Solanum tuberosum HOM05D009034 ORTHO05D009362 4.2e-10 70.1 298 25.2
Peaxi162Scf00016g00626 Petunia axillaris HOM05D009034 ORTHO05D009362 7.1e-10 69.3 348 24.4
SalBow6G4060 Salvia bowleyana HOM05D008179 ORTHO05D009362 7.1e-10 69.3 344 24.1
Peaxi162Scf00263g00093 Petunia axillaris HOM05D009034 ORTHO05D009362 1.2e-09 68.6 196 28.1
Nitab4.5_0006159g0010 Nicotiana tabacum HOM05D009034 ORTHO05D009362 1.6e-09 68.2 288 24.3
FAN22G0489 Fragaria x ananassa HOM05D008179 ORTHO05D009362 7.8e-09 65.9 222 28.4
Lj1C663T2 Lonicera japonica HOM05D000007 ORTHO05D000039 7.8e-09 65.9 308 26.0
Solyc01g109730.1 Solanum lycopersicum HOM05D009034 ORTHO05D009362 1.0e-08 65.5 187 31.0
Nitab4.5_0009524g0020 Nicotiana tabacum HOM05D009034 ORTHO05D009362 1.3e-08 65.1 182 31.3
FAN20G2427 Fragaria x ananassa HOM05D008179 ORTHO05D009362 3.9e-08 63.5 103 34.0
FAN27G1228 Fragaria x ananassa HOM05D008179 ORTHO05D009362 3.9e-08 63.5 117 35.9
Lj1A671T54 Lonicera japonica HOM05D000007 ORTHO05D000039 3.9e-08 63.5 264 23.5
Nitab4.5_0010389g0020 Nicotiana tabacum HOM05D009034 ORTHO05D009362 3.9e-08 63.5 182 30.8
Lj1A662G33 Lonicera japonica HOM05D000007 ORTHO05D000039 5.1e-08 63.2 283 27.2
Nitab4.5_0000308g0340 Nicotiana tabacum HOM05D009034 ORTHO05D009362 6.6e-08 62.8 149 32.9
Prupe.3G110600 Prunus persica HOM05D000007 ORTHO05D000039 8.7e-08 62.4 252 24.6
CANSAT56G0601 Cannabis sativa HOM05D008179 ORTHO05D009362 1.1e-07 62.0 319 26.0
Prupe.3G110400 Prunus persica HOM05D000007 ORTHO05D000039 1.1e-07 62.0 304 22.4
Aa31LG4G2980 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.5e-07 61.6 316 23.4
Lj1C663T1 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-07 61.2 313 22.7
Nn1g09439 Nelumbo nucifera HOM05D006664 ORTHO05D008819 1.9e-07 61.2 363 21.8
FAN16G0437 Fragaria x ananassa HOM05D008179 ORTHO05D009362 2.5e-07 60.8 91 39.6
Lj1A671T53 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-07 60.8 258 22.5
Lj1C671T7 Lonicera japonica HOM05D000007 ORTHO05D000039 4.3e-07 60.1 247 23.5
unitig_0.g2579 Utricularia gibba HOM05D007162 ORTHO05D007631 5.6e-07 59.7 278 24.5
FvH4_5g11823 Fragaria vesca HOM05D000007 ORTHO05D000039 7.3e-07 59.3 305 22.3
Peaxi162Scf00324g00823 Petunia axillaris HOM05D013374 ORTHO05D013933 9.6e-07 58.9 368 22.3
Cfa000428 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.6e-06 58.2 284 24.3
Potri.001G458400 Populus trichocarpa HOM05D000007 ORTHO05D000101 1.6e-06 58.2 293 21.8
Dinv17447 Davidia involucrata HOM05D000007 ORTHO05D000676 2.8e-06 57.4 203 29.1
Dinv06537 Davidia involucrata HOM05D000007 ORTHO05D000039 3.6e-06 57.0 287 26.5
Lj1C674T3 Lonicera japonica HOM05D000007 ORTHO05D000039 4.8e-06 56.6 306 19.3
AT3G10240 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 6.2e-06 56.2 314 22.9
Dinv06511 Davidia involucrata HOM05D000007 ORTHO05D000039 8.1e-06 55.8 303 23.4
FAN18G2360 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.1e-06 55.8 320 24.4
PGSC0003DMG400045426 Solanum tuberosum HOM05D000171 ORTHO05D000101 8.1e-06 55.8 249 25.3


User provided reference genes

Program Settings