Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.4e-65 251.5 129 100.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.4e-58 229.6 129 89.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.4e-57 224.9 127 89.0
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.2e-55 218.4 123 87.8
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.2e-55 217.2 127 84.3
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.2e-55 217.2 128 87.5
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 9.4e-55 216.9 128 86.7
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 3.6e-54 214.9 123 86.2
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 6.1e-54 214.2 123 84.6
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.9e-54 213.8 127 83.5
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.9e-54 213.8 127 83.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.0e-53 213.4 127 83.5
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 2.3e-53 212.2 127 81.1
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.0e-53 211.8 123 84.6
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.0e-53 211.8 128 84.4
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.9e-53 211.5 122 86.1
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 3.9e-53 211.5 127 84.3
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 3.9e-53 211.5 123 84.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 3.9e-53 211.5 123 84.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 5.2e-53 211.1 123 84.6
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 6.7e-53 210.7 128 83.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.1e-52 209.9 122 85.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-52 209.9 123 82.9
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.5e-52 209.5 120 85.8
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.0e-52 209.1 123 82.9
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.6e-52 208.8 121 85.1
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 3.3e-52 208.4 118 86.4
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 3.3e-52 208.4 127 83.5
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.4e-52 208.0 128 80.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.4e-52 208.0 127 80.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.7e-52 207.6 127 79.5
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.4e-52 207.2 123 81.3
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.4e-52 207.2 127 79.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 9.7e-52 206.8 121 85.1
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.3e-51 206.5 122 81.1
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.8e-51 205.3 121 83.5
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.8e-51 205.3 126 82.5
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.8e-51 205.3 123 82.1
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.7e-51 204.9 123 82.9
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 4.8e-51 204.5 123 80.5
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.8e-51 204.5 118 85.6
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 6.3e-51 204.1 127 78.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.1e-50 203.4 121 79.3
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.1e-50 203.4 119 84.0
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.4e-50 203.0 121 82.6
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 3.1e-50 201.8 124 79.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 4.1e-50 201.4 120 80.8
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.3e-50 201.1 127 78.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.2e-49 199.9 123 78.9
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.6e-49 199.5 127 77.2
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.6e-49 199.5 131 73.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.6e-49 198.7 118 81.4
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 123 80.5
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 4.5e-49 198.0 121 80.2
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 5.9e-49 197.6 121 77.7
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.0e-48 196.8 123 79.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 76.9
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.7e-48 196.1 121 79.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-48 195.3 123 80.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.9e-48 195.3 119 79.0
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.8e-48 194.9 123 79.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 3.8e-48 194.9 119 77.3
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 3.8e-48 194.9 119 77.3
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 3.8e-48 194.9 119 77.3
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.8e-48 194.9 120 78.3
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.8e-48 194.9 110 88.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.0e-48 194.5 119 76.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.0e-48 194.5 119 76.5
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 5.0e-48 194.5 122 76.2
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 79.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 6.5e-48 194.1 120 75.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 6.5e-48 194.1 123 78.9
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.5e-48 194.1 123 75.6
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 8.5e-48 193.7 123 79.7
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 8.5e-48 193.7 123 80.5
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 8.5e-48 193.7 123 76.4
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-47 193.4 119 76.5
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.5e-47 193.0 119 75.6
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.9e-47 192.6 117 81.2
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-47 191.8 123 77.2
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.2e-47 190.7 116 77.6
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 9.4e-47 190.3 125 76.0
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.2e-46 189.9 122 77.0
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.2e-46 189.9 122 73.8
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.6e-46 189.5 116 77.6
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.6e-46 189.5 122 73.8
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 2.7e-46 188.7 123 75.6
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 4.7e-46 188.0 121 74.4
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 6.1e-46 187.6 114 78.1
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 6.1e-46 187.6 117 76.1
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.0e-46 187.2 105 87.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.0e-45 186.8 123 76.4
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.7e-45 184.1 117 71.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.7e-45 184.1 117 71.8
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 6.7e-45 184.1 108 85.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 8.8e-45 183.7 123 68.3
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-44 183.0 117 71.8
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 2.0e-44 182.6 121 76.0
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.0e-44 182.6 117 75.2
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.3e-44 181.8 121 76.9
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.2e-43 179.1 108 78.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.8e-42 176.0 113 79.6
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.3e-42 174.5 104 80.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.2e-41 173.3 123 66.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.6e-41 172.9 123 69.1
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 3.5e-41 171.8 117 73.5
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.7e-41 170.6 98 87.8
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.0e-40 170.2 98 85.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.7e-40 169.5 119 72.3
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 3.8e-40 168.3 98 83.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 8.5e-40 167.2 121 70.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.5e-39 166.4 120 69.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.2e-39 164.9 99 82.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.4e-37 159.8 90 84.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 6.8e-37 157.5 100 74.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.2e-36 156.8 120 69.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.4e-36 155.2 123 65.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 4.4e-36 154.8 130 62.3
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 5.7e-36 154.5 113 69.0
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.7e-36 154.5 96 78.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.7e-36 154.5 121 64.5
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 9.8e-36 153.7 121 65.3
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.7e-35 152.9 121 66.1
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 3.7e-35 151.8 98 74.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 3.7e-35 151.8 98 74.5
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 4.1e-34 148.3 106 67.9
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.5e-33 144.8 86 82.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 2.3e-32 142.5 100 71.0
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.1e-31 140.2 87 74.7
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.9e-31 139.4 83 77.1
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 3.2e-31 138.7 116 56.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 7.2e-31 137.5 123 63.4
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.1e-30 134.4 86 72.1
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 8.0e-30 134.0 108 64.8
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.8e-29 132.9 98 68.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 4.4e-28 128.3 113 53.1
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.8e-28 127.1 88 65.9
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.7e-27 126.3 116 56.9
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 6.3e-27 124.4 84 76.2
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.8e-26 122.9 122 57.4
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 2.4e-26 122.5 122 50.0
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 3.1e-26 122.1 121 47.1
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 4.1e-26 121.7 118 49.2
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.2e-25 120.2 113 50.4
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 4.5e-25 118.2 114 54.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.0e-24 117.1 125 49.6
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.0e-24 117.1 122 48.4
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.9e-23 112.8 118 50.8
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.3e-23 111.7 132 47.7
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.3e-23 111.7 106 51.9
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 8.0e-22 107.5 131 47.3
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 8.0e-22 107.5 76 77.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 4.0e-21 105.1 63 76.2
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 3.4e-20 102.1 61 82.0
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 3.2e-10 68.9 57 50.9
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 4.6e-09 65.1 75 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.6e-09 65.1 35 80.0
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.3e-07 58.9 111 32.4
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 5.6e-07 58.2 111 29.7
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 7.3e-07 57.8 111 33.3
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 6.2e-06 54.7 111 29.7
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 8.1e-06 54.3 111 32.4
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 8.1e-06 54.3 111 29.7


User provided reference genes

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