Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 1.2e-32 142.5 71 100.0
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 1.4e-28 129.0 71 87.3
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 4.1e-28 127.5 72 87.5
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 7.0e-28 126.7 71 87.3
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 7.0e-28 126.7 71 84.5
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 9.2e-28 126.3 71 87.3
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 1.2e-27 125.9 73 86.3
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 1.2e-27 125.9 73 86.3
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 1.2e-27 125.9 73 86.3
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.6e-27 125.6 73 87.7
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 1.6e-27 125.6 71 85.9
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 2.7e-27 124.8 72 88.9
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 3.5e-27 124.4 71 84.5
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 3.5e-27 124.4 72 87.5
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 3.5e-27 124.4 73 86.3
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 6.0e-27 123.6 72 84.7
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 6.0e-27 123.6 73 87.7
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 7.8e-27 123.2 73 84.9
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 1.7e-26 122.1 72 84.7
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 2.3e-26 121.7 73 84.9
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.3e-26 121.7 73 82.2
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 3.9e-26 120.9 71 85.9
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 3.9e-26 120.9 69 79.7
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 3.9e-26 120.9 73 82.2
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 5.0e-26 120.6 72 81.9
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 6.6e-26 120.2 72 81.9
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 8.6e-26 119.8 73 83.6
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 8.6e-26 119.8 71 85.9
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 1.5e-25 119.0 73 79.5
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 1.5e-25 119.0 69 82.6
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 2.5e-25 118.2 72 80.6
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 2.5e-25 118.2 72 79.2
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 2.5e-25 118.2 71 81.7
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 4.3e-25 117.5 73 80.8
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 4.3e-25 117.5 71 81.7
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 4.3e-25 117.5 71 80.3
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 4.3e-25 117.5 71 84.5
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 5.6e-25 117.1 73 80.8
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 5.6e-25 117.1 72 79.2
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 7.3e-25 116.7 71 81.7
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 7.3e-25 116.7 71 83.1
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 7.3e-25 116.7 71 81.7
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 9.5e-25 116.3 65 86.2
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 9.5e-25 116.3 71 80.3
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 9.5e-25 116.3 71 80.3
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 9.5e-25 116.3 71 84.5
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.2e-24 115.9 71 80.3
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.2e-24 115.9 73 80.8
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 1.2e-24 115.9 71 73.2
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 1.6e-24 115.5 71 84.5
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 1.6e-24 115.5 71 84.5
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 1.6e-24 115.5 72 79.2
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 2.8e-24 114.8 70 78.6
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 2.8e-24 114.8 72 79.2
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 2.8e-24 114.8 71 84.5
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 2.8e-24 114.8 71 84.5
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 2.8e-24 114.8 71 73.2
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 80.3
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 4.7e-24 114.0 71 78.9
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 8.0e-24 113.2 71 78.9
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 8.0e-24 113.2 71 83.1
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 1.1e-23 112.8 71 77.5
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 1.1e-23 112.8 74 74.3
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.4e-23 112.5 70 77.1
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.4e-23 112.5 69 73.9
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 77.5
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 77.5
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.8e-23 112.1 71 77.5
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 3.1e-23 111.3 69 73.9
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 4.0e-23 110.9 70 74.3
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 5.2e-23 110.5 72 76.4
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 5.2e-23 110.5 71 76.1
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 5.2e-23 110.5 69 76.8
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 6.8e-23 110.2 70 77.1
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.5e-22 109.0 71 74.6
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.5e-22 109.0 71 74.6
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 2.6e-22 108.2 71 74.6
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 3.4e-22 107.8 71 73.2
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 4.4e-22 107.5 71 73.2
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 5.8e-22 107.1 71 69.0
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 2.9e-21 104.8 63 76.2
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 3.7e-21 104.4 71 73.2
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 4.9e-21 104.0 81 64.2
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 8.3e-21 103.2 69 72.5
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 3.2e-20 101.3 65 76.9
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 3.2e-20 101.3 63 79.4
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 5.4e-20 100.5 65 73.8
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 5.4e-20 100.5 63 79.4
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 5.4e-20 100.5 63 79.4
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 7.0e-20 100.1 64 78.1
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 2.7e-19 98.2 64 76.6
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 7.8e-19 96.7 63 73.0
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 2.3e-18 95.1 64 75.0
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 4.7e-16 87.4 59 71.2
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 1.4e-15 85.9 59 69.5
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 3.7e-13 77.8 66 66.7
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 3.7e-13 77.8 51 78.4
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 9.2e-12 73.2 63 60.3
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 1.2e-08 62.8 57 56.1


User provided reference genes

Program Settings