Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 3.3e-59 231.5 116 100.0
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 2.2e-34 149.1 124 71.0
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.5e-22 107.8 118 54.2
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.3e-18 96.7 120 52.5
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.7e-18 96.3 125 50.4
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 3.1e-17 92.0 77 63.6
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.6e-16 89.7 116 46.6
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.6e-16 89.7 152 42.8
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 2.0e-16 89.4 118 48.3
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.9e-16 87.8 125 45.6
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.9e-16 87.8 126 42.9
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-16 87.4 127 42.5
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 7.7e-16 87.4 77 62.3
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.5e-14 81.3 79 57.0
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 2.1e-13 79.3 96 51.0
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.7e-13 79.0 111 45.9
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.6e-13 78.6 88 52.3
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.7e-13 78.2 112 43.8
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 4.7e-13 78.2 98 49.0
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 6.1e-13 77.8 116 41.4
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.0e-13 77.4 92 50.0
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.0e-12 77.0 106 44.3
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.0e-12 77.0 80 50.0
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.4e-12 76.6 126 42.1
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.4e-12 76.6 103 42.7
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.3e-12 75.9 122 47.5
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 8.8e-12 73.9 84 48.8
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.2e-11 73.6 72 55.6
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.5e-11 73.2 67 50.7
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.5e-11 73.2 102 41.2
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 3.4e-11 72.0 116 41.4
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 4.4e-11 71.6 112 38.4
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.4e-11 71.6 105 41.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.5e-11 70.9 81 48.1
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 1.7e-10 69.7 107 43.9
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.7e-10 69.7 93 49.5
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.2e-10 69.3 81 48.1
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.8e-10 68.9 74 47.3
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.7e-10 68.6 101 38.6
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.7e-10 68.6 66 56.1
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 4.8e-10 68.2 93 47.3
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 4.8e-10 68.2 89 41.6
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 4.8e-10 68.2 157 33.1
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 4.8e-10 68.2 87 42.5
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 4.8e-10 68.2 102 37.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 8.3e-10 67.4 83 43.4
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 8.3e-10 67.4 87 42.5
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 8.3e-10 67.4 119 40.3
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 8.3e-10 67.4 72 45.8
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.4e-09 66.6 118 39.8
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 1.8e-09 66.2 118 41.5
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.4e-09 65.9 60 53.3
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.1e-09 65.5 72 45.8
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.1e-09 65.5 80 47.5
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.1e-09 65.1 81 45.7
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.0e-09 64.3 100 42.0
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.1e-09 63.9 116 40.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 2.0e-08 62.8 59 52.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.7e-08 62.4 103 40.8
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 2.7e-08 62.4 70 47.1
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 4.5e-08 61.6 70 45.7
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 4.5e-08 61.6 98 40.8
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 4.5e-08 61.6 113 36.3
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 4.5e-08 61.6 75 50.7
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 5.9e-08 61.2 77 48.1
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.9e-08 61.2 89 39.3
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 5.9e-08 61.2 63 46.0
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.9e-08 61.2 61 49.2
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 5.9e-08 61.2 74 40.5
Lalb_Chr03g0027791 Lupinus albus HOM05D014522 ORTHO05D004438 7.7e-08 60.8 98 39.8
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 7.7e-08 60.8 81 50.6
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 7.7e-08 60.8 63 49.2
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.0e-07 60.5 69 49.3
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.3e-07 60.1 97 35.1
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.3e-07 60.1 71 45.1
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.3e-07 60.1 91 44.0
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-07 59.7 110 33.6
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.7e-07 59.7 62 48.4
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.7e-07 59.7 84 40.5
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.7e-07 59.7 104 34.6
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 2.3e-07 59.3 101 38.6
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.3e-07 59.3 107 36.4
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.9e-07 58.9 59 52.5
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 2.9e-07 58.9 77 46.8
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 2.9e-07 58.9 89 41.6
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 2.9e-07 58.9 98 40.8
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 2.9e-07 58.9 118 39.0
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 3.8e-07 58.5 96 37.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 3.8e-07 58.5 99 38.4
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.8e-07 58.5 76 42.1
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.8e-07 58.5 59 55.9
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.8e-07 58.5 63 49.2
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 5.0e-07 58.2 151 30.5
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.0e-07 58.2 82 43.9
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 5.0e-07 58.2 62 48.4
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 5.0e-07 58.2 63 46.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.6e-07 57.8 110 33.6
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.6e-07 57.8 76 42.1
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.6e-07 57.8 110 33.6
Oeu026982.1 Olea europaea HOM05D047474 ORTHO05D004438 6.6e-07 57.8 84 42.9
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.6e-07 57.4 76 42.1
Glyma.12G082800 Glycine max HOM05D014522 ORTHO05D004438 1.1e-06 57.0 112 36.6
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-06 57.0 95 41.1
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.5e-06 56.6 93 38.7
CsaV3_1G014250 Cucumis sativus L. HOM05D026992 ORTHO05D004438 1.5e-06 56.6 94 42.6
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 1.5e-06 56.6 58 51.7
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-06 56.6 63 50.8
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.5e-06 56.6 86 41.9
BraA08t35439Z Brassica rapa HOM05D010843 ORTHO05D012975 1.9e-06 56.2 98 40.8
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.9e-06 56.2 96 37.5
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-06 56.2 63 50.8
CARHR008010 Cardamine hirsuta HOM05D010843 ORTHO05D012975 2.5e-06 55.8 62 50.0
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.5e-06 55.8 63 50.8
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-06 55.8 82 43.9
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-06 55.8 63 50.8
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-06 55.8 63 50.8
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.3e-06 55.5 77 41.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-06 55.1 69 42.0
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-06 55.1 69 42.0
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 4.2e-06 55.1 91 40.7
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.2e-06 55.1 75 40.0
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.5e-06 54.7 71 47.9
Lalb_Chr19g0136841 Lupinus albus HOM05D014522 ORTHO05D004438 5.5e-06 54.7 78 43.6
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 5.5e-06 54.7 68 44.1
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 5.5e-06 54.7 58 50.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 7.2e-06 54.3 73 39.7
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 7.2e-06 54.3 99 37.4
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 9.5e-06 53.9 98 39.8
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 9.5e-06 53.9 98 38.8
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 9.5e-06 53.9 98 38.8
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 9.5e-06 53.9 112 35.7
Oeu026980.1 Olea europaea HOM05D047474 ORTHO05D004438 9.5e-06 53.9 84 41.7
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 9.5e-06 53.9 116 32.8
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 9.5e-06 53.9 73 42.5


User provided reference genes

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