Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 4.1e-25 117.1 52 100.0
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 6.1e-21 103.2 50 88.0
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 4.8e-18 93.6 52 78.8
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.8e-18 93.6 50 82.0
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 4.8e-18 93.6 50 82.0
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 6.3e-18 93.2 50 78.0
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 6.3e-18 93.2 51 78.4
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 1.1e-17 92.4 45 82.2
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 1.4e-17 92.0 51 78.4
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 1.8e-17 91.7 47 74.5
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.8e-17 91.7 50 80.0
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.8e-17 91.7 50 82.0
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.4e-17 91.3 50 80.0
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 3.1e-17 90.9 40 92.5
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 3.1e-17 90.9 47 78.7
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 3.1e-17 90.9 46 78.3
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 4.1e-17 90.5 50 76.0
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 4.1e-17 90.5 51 76.5
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 4.1e-17 90.5 48 77.1
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 5.3e-17 90.1 50 74.0
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 5.3e-17 90.1 49 79.6
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 5.3e-17 90.1 43 81.4
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 5.3e-17 90.1 48 77.1
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 7.0e-17 89.7 50 74.0
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 7.0e-17 89.7 50 78.0
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 7.0e-17 89.7 51 80.4
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 7.0e-17 89.7 49 73.5
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 9.1e-17 89.4 47 76.6
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.2e-16 89.0 52 75.0
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 1.6e-16 88.6 47 72.3
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-16 88.6 50 78.0
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 2.7e-16 87.8 47 72.3
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 2.7e-16 87.8 51 78.4
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 2.7e-16 87.8 50 74.0
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 3.5e-16 87.4 51 74.5
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 4.5e-16 87.0 51 76.5
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 5.9e-16 86.7 40 85.0
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 7.7e-16 86.3 46 71.7
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.0e-15 85.9 50 70.0
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 1.3e-15 85.5 47 74.5
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 1.7e-15 85.1 47 72.3
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 3.8e-15 84.0 53 71.7
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 3.8e-15 84.0 53 69.8
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 3.8e-15 84.0 53 69.8
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 3.8e-15 84.0 47 70.2
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 6.5e-15 83.2 53 69.8
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 6.5e-15 83.2 53 69.8
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 6.5e-15 83.2 48 72.9
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 6.5e-15 83.2 53 67.9
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 1.1e-14 82.4 51 70.6
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.1e-14 82.4 39 84.6
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 1.1e-14 82.4 47 72.3
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 1.1e-14 82.4 46 71.7
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 1.5e-14 82.0 51 70.6
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 1.5e-14 82.0 42 73.8
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 1.5e-14 82.0 42 73.8
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 1.5e-14 82.0 51 70.6
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 1.5e-14 82.0 52 65.4
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.5e-14 81.3 54 70.4
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 3.2e-14 80.9 47 72.3
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 4.2e-14 80.5 50 66.0
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 5.5e-14 80.1 52 67.3
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 7.2e-14 79.7 51 66.7
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 7.2e-14 79.7 51 70.6
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 7.2e-14 79.7 53 67.9
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 1.2e-13 79.0 45 66.7
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 1.6e-13 78.6 40 75.0
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 1.6e-13 78.6 50 66.0
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.6e-13 78.6 38 81.6
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 2.1e-13 78.2 50 70.0
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.7e-13 77.8 41 80.5
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 4.7e-13 77.0 51 68.6
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 6.1e-13 76.6 51 66.7
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 6.1e-13 76.6 52 65.4
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 6.1e-13 76.6 51 64.7
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 8.0e-13 76.3 51 62.7
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 1.0e-12 75.9 71 52.1
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.0e-12 75.9 49 65.3
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.0e-12 75.9 49 65.3
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 1.4e-12 75.5 52 63.5
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 2.3e-12 74.7 51 66.7
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 3.0e-12 74.3 46 60.9
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 3.0e-12 74.3 46 60.9
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 3.0e-12 74.3 50 68.0
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.0e-12 74.3 38 78.9
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 2.0e-11 71.6 43 67.4
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 2.6e-11 71.2 46 60.9
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 5.7e-11 70.1 45 57.8
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 1.3e-10 68.9 37 73.0
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 2.2e-10 68.2 70 48.6
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 2.2e-10 68.2 47 59.6
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 6.3e-10 66.6 78 42.3
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 8.3e-10 66.2 47 55.3
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 3.1e-09 64.3 37 64.9
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 4.1e-09 63.9 37 67.6
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 5.4e-09 63.5 64 45.3
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 9.1e-09 62.8 119 33.6
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 1.2e-08 62.4 63 42.9
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 1.2e-08 62.4 73 42.5
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 2.0e-08 61.6 47 53.2
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 4.5e-08 60.5 68 45.6
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 4.5e-08 60.5 68 45.6
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 5.9e-08 60.1 62 45.2
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 7.7e-08 59.7 57 47.4
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 5.0e-07 57.0 37 56.8
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 7.2e-06 53.1 27 74.1
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 9.5e-06 52.8 23 91.3
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 9.5e-06 52.8 23 91.3


User provided reference genes

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