Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G008575 Manihot esculenta HOM05D000021 ORTHO05D000010 9.3e-83 311.2 329 100.0
Manes.04G009301 Manihot esculenta HOM05D000021 ORTHO05D000010 1.7e-28 131.0 93 90.3
Ciclev10014130m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.0e-25 121.7 243 79.0
Duzib093G0487 Durio zibethinus HOM05D000021 ORTHO05D000010 1.8e-25 120.9 142 73.2
MD15G1075000 Malus domestica HOM05D000021 ORTHO05D000010 1.8e-25 120.9 246 57.3
Manes.04G008600 Manihot esculenta HOM05D000021 ORTHO05D000010 1.2e-24 118.2 92 82.6
Thecc.08G094300 Theobroma cacao HOM05D000021 ORTHO05D000010 1.5e-24 117.9 142 81.7
vmacro21467 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.9e-23 113.6 93 81.7
CSS0037605 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 6.4e-23 112.5 141 80.9
Glyma.08G128900 Glycine max HOM05D000021 ORTHO05D000010 1.4e-22 111.3 142 69.7
Glyma.05G170600 Glycine max HOM05D000021 ORTHO05D000010 1.9e-22 110.9 142 76.8
Phvul.002G251400 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 3.2e-22 110.2 142 68.3
Prupe.1G427800 Prunus persica HOM05D000021 ORTHO05D000010 3.2e-22 110.2 91 76.9
Dinv35910 Davidia involucrata HOM05D000021 ORTHO05D000010 5.4e-22 109.4 142 79.6
Gohir.A01G121300 Gossypium hirsutum HOM05D000021 ORTHO05D000010 7.0e-22 109.0 143 79.7
Gohir.D01G108800 Gossypium hirsutum HOM05D000021 ORTHO05D000010 7.0e-22 109.0 143 80.4
Prupe.1G427700 Prunus persica HOM05D000021 ORTHO05D000010 7.0e-22 109.0 246 68.3
EL10Ac3g07264 Beta vulgaris HOM05D000021 ORTHO05D000010 9.2e-22 108.6 142 77.5
RcHm_v2.0_Chr5g0066021 Rosa chinensis HOM05D000021 ORTHO05D000010 9.2e-22 108.6 93 71.0
FvH4_3g36850 Fragaria vesca HOM05D000021 ORTHO05D000010 1.2e-21 108.2 93 60.2
FAN11G1897 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.2e-21 108.2 93 60.2
FAN16G2947 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.2e-21 108.2 93 60.2
FAN21G1122 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.2e-21 108.2 93 60.2
MD08G1090800 Malus domestica HOM05D000021 ORTHO05D015223 1.2e-21 108.2 93 77.4
MD15G1074900 Malus domestica HOM05D000021 ORTHO05D000010 1.2e-21 108.2 91 75.8
VMungo0251G0023 Vigna mungo HOM05D000021 ORTHO05D000010 1.2e-21 108.2 142 68.3
Dinv39254 Davidia involucrata HOM05D000021 ORTHO05D000010 2.0e-21 107.5 93 58.1
Manes.11G156900 Manihot esculenta HOM05D000021 ORTHO05D000010 2.0e-21 107.5 94 64.9
Rhsim06G0058300 Rhododendron simsii HOM05D000021 ORTHO05D000010 3.5e-21 106.7 90 78.9
TPR.G6281 Trifolium pratense HOM05D000021 ORTHO05D000010 6.0e-21 105.9 142 78.2
TWI56G0182 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 6.0e-21 105.9 92 58.7
TWI56G0871 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 6.0e-21 105.9 92 58.7
Gorai.002G133000 Gossypium raimondii HOM05D000021 ORTHO05D000010 7.8e-21 105.5 143 79.0
TAR622G0023 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.0e-20 105.1 93 76.3
RcHm_v2.0_Chr5g0066001 Rosa chinensis HOM05D000021 ORTHO05D000010 1.3e-20 104.8 93 69.9
Actinidia22668 Actinidia chinensis HOM05D000021 ORTHO05D000010 1.7e-20 104.4 93 74.2
CAN.G660.19 Capsicum annuum HOM05D000021 ORTHO05D000010 1.7e-20 104.4 93 61.3
Prupe.1G427400 Prunus persica HOM05D000021 ORTHO05D000010 1.7e-20 104.4 91 72.5
Medtr8g089210 Medicago truncatula HOM05D000021 ORTHO05D000010 2.3e-20 104.0 141 67.4
Gorai.002G131000 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.0e-20 103.6 143 79.0
Atru.chr2.979 Acer truncatum HOM05D000021 ORTHO05D000010 3.9e-20 103.2 93 76.3
MBI10_g08052_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 3.9e-20 103.2 143 61.5
Medtr8g089200 Medicago truncatula HOM05D000021 ORTHO05D000010 3.9e-20 103.2 142 68.3
Psat7g061000 Pisum sativum HOM05D000021 ORTHO05D000010 3.9e-20 103.2 117 76.9
TPR.G6181 Trifolium pratense HOM05D000021 ORTHO05D000010 3.9e-20 103.2 142 67.6
Rhsim06G0058200 Rhododendron simsii HOM05D000021 ORTHO05D000010 5.0e-20 102.8 92 71.7
TWI56G0751 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 5.0e-20 102.8 93 57.0
Cfa018029 Carpinus fangiana HOM05D000021 ORTHO05D000010 6.6e-20 102.4 94 72.3
Peaxi162Scf00683g00460 Petunia axillaris HOM05D000021 ORTHO05D000010 6.6e-20 102.4 93 66.7
COL.COLO4_28566 Corchorus olitorius HOM05D000021 ORTHO05D000010 8.6e-20 102.1 93 59.1
QL03p022844 Quercus lobata HOM05D000021 ORTHO05D000010 1.1e-19 101.7 93 72.0
THA.LOC104799793 Tarenaya hassleriana HOM05D000021 ORTHO05D000010 1.1e-19 101.7 142 66.9
DCAR_028142 Daucus carota HOM05D000021 ORTHO05D000010 1.5e-19 101.3 93 57.0
Hma1.2p1_0923F.1_g237160 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 1.9e-19 100.9 93 71.0
Haze_18096 Corylus avellana HOM05D000021 ORTHO05D000010 2.5e-19 100.5 94 71.3
Glyma.08G128800 Glycine max HOM05D000021 ORTHO05D000010 3.3e-19 100.1 142 68.3
TAR381G0941 Trochodendron aralioides HOM05D000021 ORTHO05D000010 3.3e-19 100.1 142 65.5
Hma1.2p1_0240F.1_g100100 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 4.3e-19 99.8 93 73.1
AUR62018372 Chenopodium quinoa HOM05D000021 ORTHO05D000010 9.5e-19 98.6 94 70.2
AUR62030287 Chenopodium quinoa HOM05D000021 ORTHO05D000010 9.5e-19 98.6 93 72.0
QL02p002923 Quercus lobata HOM05D000021 ORTHO05D000010 1.2e-18 98.2 142 76.8
QL02p003134 Quercus lobata HOM05D000021 ORTHO05D000010 1.2e-18 98.2 142 76.8
QL02p002998 Quercus lobata HOM05D000021 ORTHO05D000010 1.6e-18 97.8 93 74.2
Aqoxy1G03445 Aquilegia oxysepala HOM05D020225 ORTHO05D015223 2.1e-18 97.4 117 75.2
COL.COLO4_28564 Corchorus olitorius HOM05D000021 ORTHO05D000028 2.1e-18 97.4 89 70.8
Actinidia10182 Actinidia chinensis HOM05D000021 ORTHO05D000010 2.8e-18 97.1 93 57.0
Lj4C66T10 Lonicera japonica HOM05D000021 ORTHO05D000010 6.2e-18 95.9 93 72.0
DCAR_028141 Daucus carota HOM05D000021 ORTHO05D000010 8.0e-18 95.5 93 54.8
Lj4g0015959 Lotus japonicus HOM05D000021 ORTHO05D000010 8.0e-18 95.5 141 68.1
QL02p003154 Quercus lobata HOM05D000021 ORTHO05D000010 1.1e-17 95.1 142 76.1
Lalb_Chr13g0295771 Lupinus albus HOM05D000021 ORTHO05D000010 1.4e-17 94.7 142 75.4
vmacro21469 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.8e-17 94.4 90 56.7
vmacro21470 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.8e-17 94.4 90 54.4
MSTRG.22235 Avicennia marina HOM05D000021 ORTHO05D000010 3.1e-17 93.6 142 57.7
CiPaw.15G049000 Carya illinoinensis HOM05D000021 ORTHO05D000010 4.0e-17 93.2 93 73.1
Nn1g04225 Nelumbo nucifera HOM05D000021 ORTHO05D000010 4.0e-17 93.2 92 70.7
Phvul.002G215100 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 8.9e-17 92.0 93 54.8
Potri.005G037400 Populus trichocarpa HOM05D000021 ORTHO05D000010 1.5e-16 91.3 93 62.4
vmacro21468 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.5e-16 91.3 91 56.0
Nn1g04224 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.0e-16 90.9 90 68.9
TPR.G6206 Trifolium pratense HOM05D000021 ORTHO05D000010 2.0e-16 90.9 142 72.5
HanXRQChr02g0039091 Helianthus annuus HOM05D000021 ORTHO05D000010 2.6e-16 90.5 220 69.1
Nn1g09086 Nelumbo nucifera HOM05D000021 ORTHO05D000010 2.6e-16 90.5 93 66.7
Sabra05G0038700 Salix brachista HOM05D000021 ORTHO05D000010 3.4e-16 90.1 93 66.7
ECA232G0354 Erigeron canadensis HOM05D000021 ORTHO05D000010 5.8e-16 89.4 93 51.6
Lsat_1_v5_gn_4_130100 Lactuca sativa HOM05D000021 ORTHO05D000010 7.5e-16 89.0 93 51.6
Potri.004G060100 Populus trichocarpa HOM05D000021 ORTHO05D000010 7.5e-16 89.0 92 51.1
Carub.0008s0324 Capsella rubella HOM05D000021 ORTHO05D000010 9.8e-16 88.6 92 69.6
ECA232G0471 Erigeron canadensis HOM05D000021 ORTHO05D000010 9.8e-16 88.6 93 51.6
Ciclev10018324m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.3e-15 88.2 94 69.1
Phvul.002G251604 Phaseolus vulgaris HOM05D000021 ORTHO05D000010 2.9e-15 87.0 84 56.0
Sc09g0004730 Simmondsia chinensis HOM05D000021 ORTHO05D000010 6.4e-15 85.9 95 66.3
Migut.O00750 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.1e-14 85.1 92 54.3
CiPaw.15G048900 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.4e-14 84.7 93 53.8
ClCG08G016270 Citrullus lanatus HOM05D000021 ORTHO05D000010 1.4e-14 84.7 143 70.6
HanXRQChr11g0331851 Helianthus annuus HOM05D000021 ORTHO05D000010 1.4e-14 84.7 90 53.3
Actinidia10174 Actinidia chinensis HOM05D000021 ORTHO05D000010 1.9e-14 84.3 80 66.2
BraA02t07912Z Brassica rapa HOM05D000021 ORTHO05D000010 1.9e-14 84.3 92 66.3
BcaC03g16720 Brassica carinata HOM05D000021 ORTHO05D000010 2.4e-14 84.0 92 65.2
A02p28800 Brassica napus HOM05D000021 ORTHO05D000010 2.4e-14 84.0 92 65.2
C02p45770 Brassica napus HOM05D000021 ORTHO05D000010 2.4e-14 84.0 92 65.2
BolC2t10638H Brassica oleracea HOM05D000021 ORTHO05D000010 2.4e-14 84.0 92 65.2
Lsat_1_v5_gn_4_130161 Lactuca sativa HOM05D000021 ORTHO05D000010 2.4e-14 84.0 91 50.5
CiPaw.15G049100 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.2e-14 83.6 93 62.4
Migut.N02758 Erythranthe guttata HOM05D000021 ORTHO05D000010 3.2e-14 83.6 91 53.8
Sed0017576 Sechium edule HOM05D000021 ORTHO05D000010 3.2e-14 83.6 141 61.0
Sc09g0006670 Simmondsia chinensis HOM05D000021 ORTHO05D000010 5.4e-14 82.8 94 66.0
BcaB07g30482 Brassica carinata HOM05D000021 ORTHO05D000010 7.0e-14 82.4 91 64.8
arahy.Tifrunner.gnm1.ann1.P83KK6 Arachis hypogaea HOM05D000021 ORTHO05D000010 1.2e-13 81.6 143 63.6
CsaV3_2G026340 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.2e-13 81.6 92 51.1
MELO3C010826.2 Cucumis melo HOM05D000021 ORTHO05D000010 1.6e-13 81.3 141 60.3
arahy.Tifrunner.gnm1.ann1.15KEFW Arachis hypogaea HOM05D000021 ORTHO05D000010 2.1e-13 80.9 143 62.9
MELO3C010827.2 Cucumis melo HOM05D000021 ORTHO05D000010 3.5e-13 80.1 78 67.9
Ah.04g150790 Amaranthus hybridus HOM05D000021 ORTHO05D000010 7.8e-13 79.0 61 65.6
AL8G14350 Arabidopsis lyrata HOM05D000021 ORTHO05D000010 1.3e-12 78.2 85 67.1
Lsat_1_v5_gn_4_129001 Lactuca sativa HOM05D000021 ORTHO05D000010 1.7e-12 77.8 92 58.7
MELO3C010825.2 Cucumis melo HOM05D000021 ORTHO05D000010 2.3e-12 77.4 68 57.4
CsaV3_2G026330 Cucumis sativus L. HOM05D000021 ORTHO05D000010 5.1e-12 76.3 68 57.4
Sed0002992 Sechium edule HOM05D000021 ORTHO05D000010 1.9e-11 74.3 68 57.4
ATR0088G026 Amborella trichopoda HOM05D000021 ORTHO05D000010 3.3e-11 73.6 93 41.9
CiPaw.15G048800 Carya illinoinensis HOM05D000021 ORTHO05D000010 5.6e-11 72.8 93 63.4
ClCG08G016290 Citrullus lanatus HOM05D000021 ORTHO05D000010 7.3e-11 72.4 61 60.7
Haze_27549 Corylus avellana HOM05D000021 ORTHO05D000010 2.3e-09 67.4 74 62.2
CDE01G0129 Ceratophyllum demersum HOM05D000021 ORTHO05D000010 3.1e-09 67.0 118 54.2
Sed0003365 Sechium edule HOM05D000021 ORTHO05D000010 6.8e-09 65.9 68 60.3
PSO210G7587 Papaver somniferum HOM05D000021 ORTHO05D000010 8.9e-09 65.5 93 47.3
CsaV3_2G026350 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.2e-08 65.1 68 67.6
Sc09g0006650 Simmondsia chinensis HOM05D000021 ORTHO05D000010 1.2e-08 65.1 64 54.7
RcHm_v2.0_Chr1g0353721 Rosa chinensis HOM05D000021 ORTHO05D000010 4.4e-08 63.2 67 49.3
PSO447G0162 Papaver somniferum HOM05D000021 ORTHO05D000010 5.8e-08 62.8 93 43.0
DCAR_004508 Daucus carota HOM05D000021 ORTHO05D000010 7.5e-08 62.4 220 55.9
Hma1.2p1_2290F.1_g319020 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 7.5e-08 62.4 63 47.6
Aqoxy1G00865 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 9.9e-08 62.0 91 46.2
MBI14_g09005_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 9.9e-08 62.0 67 49.3
TPR.G40196 Trifolium pratense HOM05D000021 ORTHO05D000010 2.2e-07 60.8 67 46.3
Cc09_g05470 Coffea canephora HOM05D000021 ORTHO05D000010 2.9e-07 60.5 92 39.1
Aqoxy1G00868 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 3.7e-07 60.1 91 36.3
Eucgr.C03748 Eucalyptus grandis HOM05D000021 ORTHO05D000010 3.7e-07 60.1 95 42.1
Gohir.D05G296900 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.9e-07 59.7 68 41.2
Cc08_g10170 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 58.9 142 63.4
Cc09_g05600 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 58.9 93 39.8
TPR.G337 Trifolium pratense HOM05D000021 ORTHO05D000010 8.3e-07 58.9 67 47.8
Aqoxy1G00867 Aquilegia oxysepala HOM05D000021 ORTHO05D000010 1.4e-06 58.2 67 43.3
CSS0019114 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.4e-06 58.2 60 45.0
Migut.G00800 Erythranthe guttata HOM05D000021 ORTHO05D000010 1.4e-06 58.2 66 53.0
CsaV3_2G026320 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.9e-06 57.8 75 64.0
Dinv03885 Davidia involucrata HOM05D000021 ORTHO05D000010 1.9e-06 57.8 62 51.6
arahy.Tifrunner.gnm1.ann1.NWES2J Arachis hypogaea HOM05D000021 ORTHO05D000010 2.4e-06 57.4 67 46.3
Cc09_g05620 Coffea canephora HOM05D000021 ORTHO05D000010 2.4e-06 57.4 67 49.3
Gorai.009G314000 Gossypium raimondii HOM05D000021 ORTHO05D000010 2.4e-06 57.4 67 40.3
Medtr1g029940 Medicago truncatula HOM05D000021 ORTHO05D000010 2.4e-06 57.4 67 46.3
SEGI_22817 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.4e-06 57.4 91 34.1
Solyc06g006024.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 2.4e-06 57.4 62 45.2
CAN.G149.39 Capsicum annuum HOM05D000021 ORTHO05D000010 3.2e-06 57.0 91 37.4
Oeu056119.1 Olea europaea HOM05D000021 ORTHO05D000010 3.2e-06 57.0 65 49.2
Os04g0122200 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 3.2e-06 57.0 86 54.7
TAR594G0001 Trochodendron aralioides HOM05D000021 ORTHO05D000010 3.2e-06 57.0 93 39.8
vmacro12478 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.2e-06 57.0 90 48.9
Cc00_g26720 Coffea canephora HOM05D000021 ORTHO05D000010 4.1e-06 56.6 67 50.7
Cc08_g10280 Coffea canephora HOM05D000021 ORTHO05D000010 4.1e-06 56.6 142 52.8
Gohir.A05G297000 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.1e-06 56.6 67 40.3
Nn2g11210 Nelumbo nucifera HOM05D000021 ORTHO05D000010 4.1e-06 56.6 62 51.6
Peaxi162Scf00050g00632 Petunia axillaris HOM05D000021 ORTHO05D000010 4.1e-06 56.6 68 42.6
Solyc06g006022.1 Solanum lycopersicum HOM05D000021 ORTHO05D000010 4.1e-06 56.6 91 37.4
PGSC0003DMG400020848 Solanum tuberosum HOM05D000021 ORTHO05D000010 4.1e-06 56.6 62 45.2
CSS0027847 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 5.4e-06 56.2 67 44.8
ClCG10G021380 Citrullus lanatus HOM05D000021 ORTHO05D149540 5.4e-06 56.2 67 47.8
Ciclev10018315m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.4e-06 56.2 66 43.9
Migut.G01003 Erythranthe guttata HOM05D000021 ORTHO05D000010 5.4e-06 56.2 68 48.5
Eucgr.C03755 Eucalyptus grandis HOM05D000021 ORTHO05D000010 5.4e-06 56.2 94 37.2
Rhsim13G0070700 Rhododendron simsii HOM05D000021 ORTHO05D000010 5.4e-06 56.2 220 51.8
Hma1.2p1_0472F.1_g159600 Hydrangea macrophylla HOM05D000021 ORTHO05D000010 7.1e-06 55.8 65 50.8
MBI07_g11741_MAGBIO Magnolia biondii HOM05D000021 ORTHO05D000010 7.1e-06 55.8 67 46.3
Oeu001610.1 Olea europaea HOM05D000021 ORTHO05D000010 7.1e-06 55.8 63 46.0
TAR636G2483 Trochodendron aralioides HOM05D000021 ORTHO05D000010 7.1e-06 55.8 48 54.2
arahy.Tifrunner.gnm1.ann1.Y1KQLC Arachis hypogaea HOM05D000021 ORTHO05D000010 9.2e-06 55.5 67 44.8
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 9.2e-06 55.5 63 44.4
Cc09_g05700 Coffea canephora HOM05D000021 ORTHO05D000010 9.2e-06 55.5 93 40.9
DCAR_007384 Daucus carota HOM05D000021 ORTHO05D000010 9.2e-06 55.5 64 43.8
PGSC0003DMG400018752 Solanum tuberosum HOM05D000021 ORTHO05D000010 9.2e-06 55.5 67 40.3
PGSC0003DMG400020832 Solanum tuberosum HOM05D000021 ORTHO05D000010 9.2e-06 55.5 62 43.5
Thecc.07G113500 Theobroma cacao HOM05D000021 ORTHO05D000010 9.2e-06 55.5 60 50.0
vmacro10334 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 9.2e-06 55.5 67 40.3


User provided reference genes

Program Settings