Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 8.1e-82 307.0 152 100.0
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 3.7e-66 255.0 151 82.8
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.1e-65 251.9 151 82.1
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 4.5e-64 248.1 152 80.3
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 4.5e-64 248.1 152 80.3
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.9e-62 242.7 152 78.9
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 3.2e-62 241.9 152 79.6
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 5.5e-62 241.1 152 78.3
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 7.2e-62 240.7 153 79.1
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 7.9e-61 237.3 144 81.2
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 5.1e-60 234.6 151 77.5
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.7e-60 234.2 151 76.8
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 6.7e-60 234.2 152 77.0
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 1.1e-59 233.4 153 78.4
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.5e-59 233.0 152 75.7
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 2.5e-59 232.3 151 76.2
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 5.7e-59 231.1 151 76.2
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 5.7e-59 231.1 151 77.5
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 7.4e-59 230.7 146 77.4
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 3.7e-58 228.4 152 75.0
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 3.7e-58 228.4 152 76.3
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 4.8e-58 228.0 145 75.2
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 6.3e-58 227.6 152 75.0
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 1.8e-57 226.1 144 77.1
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.8e-57 226.1 145 76.6
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 3.1e-57 225.3 151 73.5
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 3.1e-57 225.3 151 73.5
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 5.3e-57 224.6 153 76.5
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 6.9e-57 224.2 144 74.3
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 9.0e-57 223.8 151 72.8
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 9.0e-57 223.8 151 72.8
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 1.2e-56 223.4 144 77.1
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 1.5e-56 223.0 151 72.8
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.5e-56 223.0 151 76.2
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.5e-56 223.0 151 72.8
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 2.0e-56 222.6 151 73.5
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 2.0e-56 222.6 151 73.5
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 2.0e-56 222.6 151 73.5
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 2.0e-56 222.6 146 77.4
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 2.6e-56 222.2 151 72.8
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 3.4e-56 221.9 152 73.0
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 4.5e-56 221.5 151 71.5
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 4.5e-56 221.5 151 76.2
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 5.9e-56 221.1 144 75.0
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 7.7e-56 220.7 151 72.8
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 7.7e-56 220.7 151 72.8
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 7.7e-56 220.7 152 74.3
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.0e-55 220.3 152 72.4
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.0e-55 220.3 144 74.3
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.0e-55 220.3 144 74.3
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 1.0e-55 220.3 144 74.3
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.3e-55 219.9 152 70.4
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 1.3e-55 219.9 145 73.8
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.3e-55 219.9 152 74.3
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 1.3e-55 219.9 144 75.0
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 1.7e-55 219.5 142 74.6
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 2.9e-55 218.8 152 69.7
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 1.9e-54 216.1 151 68.9
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 1.2e-53 213.4 116 82.8
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 3.6e-53 211.8 154 70.8
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 4.6e-53 211.5 138 71.7
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 6.1e-53 211.1 152 70.4
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.0e-52 210.3 148 71.6
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.4e-52 209.9 178 64.0
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 3.0e-52 208.8 145 72.4
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 3.0e-52 208.8 145 69.0
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 3.0e-52 208.8 145 68.3
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 3.9e-52 208.4 146 70.5
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 5.1e-52 208.0 114 79.8
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 5.1e-52 208.0 154 71.4
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 6.7e-52 207.6 148 70.3
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 6.7e-52 207.6 147 70.7
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 8.8e-52 207.2 147 71.4
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 1.1e-51 206.8 152 68.4
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.5e-51 206.5 148 70.3
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 2.0e-51 206.1 152 68.4
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 2.0e-51 206.1 147 70.1
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 2.6e-51 205.7 147 72.1
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 2.6e-51 205.7 152 68.4
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 4.4e-51 204.9 152 69.1
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 4.4e-51 204.9 134 73.9
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 7.4e-51 204.1 147 70.1
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.7e-50 203.0 145 69.7
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.7e-50 203.0 154 68.8
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 3.7e-50 201.8 146 67.8
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 3.7e-50 201.8 156 66.0
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.7e-50 201.8 154 70.1
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.7e-50 201.8 154 70.1
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 4.8e-50 201.4 154 70.1
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 6.3e-50 201.1 138 70.3
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.4e-49 199.9 154 69.5
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 1.8e-49 199.5 153 68.0
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.8e-49 199.5 152 66.4
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 3.1e-49 198.7 115 77.4
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 3.1e-49 198.7 144 69.4
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 4.1e-49 198.4 145 66.2
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 4.1e-49 198.4 154 69.5
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 2.6e-48 195.7 153 65.4
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 3.4e-48 195.3 146 67.1
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 2.9e-47 192.2 154 65.6
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 6.5e-47 191.0 116 75.9
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 4.2e-46 188.3 145 65.5
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 1.2e-45 186.8 113 73.5
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 9.7e-43 177.2 147 61.9
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 1.7e-42 176.4 91 82.4
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 2.2e-42 176.0 122 68.0
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 6.3e-42 174.5 86 89.5
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 1.8e-41 172.9 115 75.7
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 1.7e-39 166.4 151 57.6
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.2e-39 166.0 151 58.3
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 6.5e-39 164.5 84 84.5
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.1e-38 163.7 151 56.3
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.5e-38 163.3 123 67.5
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.9e-38 162.9 130 62.3
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 7.2e-38 161.0 122 68.9
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 2.0e-35 152.9 90 76.7
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 3.7e-34 148.7 117 60.7
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 1.1e-33 147.1 123 63.4
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 2.5e-30 136.0 118 61.0
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 2.5e-30 136.0 118 61.9
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 1.2e-29 133.7 112 61.6
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.2e-27 127.1 121 62.0
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 9.8e-27 124.0 125 56.0
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 1.3e-26 123.6 151 48.3
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 6.3e-26 121.3 115 61.7
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 6.3e-26 121.3 93 69.9
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.7e-23 113.2 95 66.3
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 2.3e-20 102.8 92 53.3
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 8.3e-18 94.4 135 39.3
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.8e-12 76.6 82 57.3
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 1.2e-11 73.9 159 36.5
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 1.5e-11 73.6 75 61.3
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 4.4e-11 72.0 81 59.3
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 2.4e-09 66.2 74 54.1


User provided reference genes

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