Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 6.4e-38 160.2 79 100.0
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.6e-33 145.6 92 81.5
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 1.4e-32 142.5 90 81.1
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 5.2e-32 140.6 90 80.0
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 5.2e-32 140.6 92 78.3
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 8.9e-32 139.8 92 77.2
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 1.2e-31 139.4 92 79.3
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 1.5e-31 139.0 90 78.9
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.5e-31 139.0 92 77.2
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.5e-31 139.0 92 77.2
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 1.5e-31 139.0 92 77.2
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 1.5e-31 139.0 90 76.7
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 1.5e-31 139.0 92 77.2
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 2.0e-31 138.7 92 77.2
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 2.0e-31 138.7 92 77.2
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 2.0e-31 138.7 90 77.8
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 2.6e-31 138.3 90 77.8
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 2.6e-31 138.3 90 77.8
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 2.6e-31 138.3 90 77.8
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 3.4e-31 137.9 92 78.3
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 3.4e-31 137.9 92 79.3
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 3.4e-31 137.9 90 77.8
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 4.4e-31 137.5 92 77.2
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 4.4e-31 137.5 90 75.6
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 7.6e-31 136.7 90 75.6
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 9.9e-31 136.3 90 77.8
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 9.9e-31 136.3 92 76.1
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 1.3e-30 136.0 90 77.8
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 1.7e-30 135.6 91 75.8
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 1.7e-30 135.6 92 77.2
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 1.7e-30 135.6 88 77.3
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 2.2e-30 135.2 92 72.8
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 2.2e-30 135.2 92 75.0
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 2.9e-30 134.8 92 73.9
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 2.9e-30 134.8 92 73.9
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 2.9e-30 134.8 92 73.9
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 2.9e-30 134.8 90 75.6
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 3.8e-30 134.4 92 76.1
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 4.9e-30 134.0 91 74.7
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 4.9e-30 134.0 91 74.7
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 8.4e-30 133.3 90 75.6
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 8.4e-30 133.3 90 73.3
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 8.4e-30 133.3 90 73.3
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 8.4e-30 133.3 92 72.8
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.1e-29 132.9 92 75.0
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 1.1e-29 132.9 90 72.2
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 1.1e-29 132.9 87 75.9
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 1.1e-29 132.9 92 72.8
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 1.1e-29 132.9 88 75.0
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.1e-29 132.9 88 75.0
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.9e-29 132.1 92 72.8
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.9e-29 132.1 92 72.8
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 1.9e-29 132.1 90 74.4
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 2.4e-29 131.7 88 73.9
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 2.4e-29 131.7 92 72.8
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 2.4e-29 131.7 92 72.8
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 3.2e-29 131.3 92 70.7
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 3.2e-29 131.3 92 72.8
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 3.2e-29 131.3 92 71.7
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 4.1e-29 131.0 92 72.8
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 9.2e-29 129.8 92 71.7
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 9.2e-29 129.8 90 74.4
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 9.2e-29 129.8 92 70.7
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.2e-28 129.4 90 72.2
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.6e-28 129.0 92 70.7
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 4.6e-28 127.5 92 69.6
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 4.6e-28 127.5 88 70.5
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 6.0e-28 127.1 90 72.2
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 1.0e-27 126.3 92 67.4
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 1.3e-27 125.9 88 70.5
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 1.3e-27 125.9 87 71.3
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 6.6e-27 123.6 92 70.7
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.1e-26 122.9 84 73.8
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.3e-26 121.3 84 72.6
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 5.6e-26 120.6 92 66.3
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 5.6e-26 120.6 90 70.0
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 7.3e-26 120.2 92 67.4
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 2.8e-25 118.2 92 65.2
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 2.8e-25 118.2 92 65.2
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 2.8e-25 118.2 92 65.2
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 2.8e-25 118.2 92 65.2
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 2.8e-25 118.2 92 65.2
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 4.7e-25 117.5 92 63.0
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 6.2e-25 117.1 92 65.2
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 6.2e-25 117.1 92 65.2
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 6.2e-25 117.1 92 64.1
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 6.2e-25 117.1 92 65.2
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 1.1e-24 116.3 92 64.1
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 1.1e-24 116.3 92 64.1
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 1.1e-24 116.3 92 64.1
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 1.1e-24 116.3 92 64.1
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 1.4e-24 115.9 92 64.1
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 1.4e-24 115.9 92 64.1
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 1.4e-24 115.9 92 64.1
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 1.8e-24 115.5 119 52.9
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 5.2e-24 114.0 92 64.1
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 5.2e-24 114.0 92 64.1
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 9.0e-24 113.2 89 64.0
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.5e-23 112.5 144 48.6
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 2.6e-23 111.7 135 49.6
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.6e-23 111.7 78 73.1
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 4.4e-23 110.9 92 62.0
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 4.4e-23 110.9 92 62.0
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.9e-22 107.5 120 50.8
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 4.9e-22 107.5 82 65.9
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 6.6e-19 97.1 83 67.5
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 4.3e-18 94.4 65 73.8
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 9.6e-18 93.2 73 63.0
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 1.6e-17 92.4 118 50.8
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 1.6e-17 92.4 66 69.7
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 6.2e-17 90.5 66 71.2
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 1.1e-16 89.7 66 71.2
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 3.1e-16 88.2 66 68.2
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.4e-15 84.7 44 86.4
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 1.9e-13 79.0 45 77.8
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.4e-13 78.6 60 65.0
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 7.9e-12 73.6 89 49.4
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 3.9e-11 71.2 83 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 1.9e-10 68.9 84 41.7
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 1.6e-09 65.9 47 70.2
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 2.1e-09 65.5 69 44.9
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 8.1e-09 63.5 53 66.0
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 6.9e-08 60.5 50 60.0
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 4.5e-07 57.8 50 58.0
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 5.8e-07 57.4 46 63.0
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 5.8e-07 57.4 35 71.4
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 2.9e-06 55.1 71 36.6


User provided reference genes

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