Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 0.0e+00 1316.2 663 100.0
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 4.8e-296 1020.8 651 77.9
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.0e-293 1013.1 655 76.6
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 4.8e-280 967.6 661 73.2
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 1.0e-277 959.9 665 73.4
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 2.5e-276 955.3 664 71.5
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 3.6e-275 951.4 661 72.8
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 2.8e-272 941.8 666 71.0
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 6.3e-264 914.1 663 69.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 1.2e-262 909.8 663 68.9
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 3.5e-262 908.3 667 68.5
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.5e-262 907.9 663 68.8
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.9e-261 905.2 623 72.2
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.5e-260 902.9 667 68.5
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 8.0e-259 897.1 661 68.2
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 2.3e-258 895.6 654 69.3
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.7e-256 889.4 655 68.5
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 8.9e-250 867.1 663 65.6
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 7.0e-247 857.4 667 65.8
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 1.3e-245 853.2 670 65.7
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.3e-245 853.2 662 64.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 3.9e-245 851.7 674 63.9
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 6.6e-245 850.9 662 65.1
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 5.6e-244 847.8 664 65.1
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.6e-243 846.3 717 63.2
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 4.0e-242 841.6 672 66.8
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.0e-242 841.6 667 65.2
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 5.2e-242 841.3 652 64.3
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 5.2e-242 841.3 678 63.9
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 8.9e-242 840.5 664 64.2
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 8.9e-242 840.5 668 64.4
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.2e-241 840.1 654 64.7
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 2.0e-241 839.3 667 66.3
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 9.8e-241 837.0 664 63.9
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.1e-239 833.6 656 64.0
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.4e-239 833.2 689 61.5
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 2.4e-239 832.4 654 65.1
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 4.1e-239 831.6 665 62.7
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 7.1e-239 830.9 656 64.2
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.2e-238 830.1 671 63.9
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 2.1e-238 829.3 669 64.4
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 3.5e-238 828.6 661 64.1
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 1.3e-237 826.6 652 66.3
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.7e-237 826.2 668 62.4
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.9e-236 822.8 667 63.9
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 3.3e-236 822.0 659 63.9
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 4.3e-236 821.6 661 63.1
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.6e-235 818.5 677 61.4
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 1.8e-234 816.2 662 63.4
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.0e-233 812.8 739 57.1
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.0e-233 812.8 654 63.9
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 7.6e-233 810.8 665 63.3
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.2e-232 809.3 674 62.8
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 2.9e-232 808.9 665 62.0
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 8.4e-232 807.4 675 63.1
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 3.2e-231 805.4 668 63.3
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 1.0e-229 800.4 658 61.4
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 3.0e-229 798.9 666 62.5
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 3.0e-229 798.9 655 61.1
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 3.9e-229 798.5 664 60.8
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 5.1e-229 798.1 661 62.5
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.8e-227 792.3 672 61.3
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 4.7e-227 791.6 674 60.4
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.2e-225 786.9 672 62.6
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 1.2e-225 786.9 708 59.3
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 2.2e-224 782.7 687 58.8
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 3.8e-224 781.9 670 59.9
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 2.4e-223 779.2 664 61.4
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 4.2e-223 778.5 664 61.9
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 5.4e-223 778.1 674 58.8
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 2.1e-222 776.2 667 58.9
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.1e-220 770.4 673 58.2
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.5e-220 770.0 677 57.6
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 9.6e-220 767.3 677 59.1
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 8.4e-216 754.2 673 57.7
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.1e-215 753.8 676 57.2
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 5.4e-215 751.5 674 57.6
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.4e-215 751.5 676 57.2
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 7.9e-214 747.7 674 57.3
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.8e-210 736.5 662 58.3
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 2.4e-210 736.1 525 70.3
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.0e-210 734.2 661 57.6
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 4.3e-204 715.3 509 71.1
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.3e-204 715.3 666 58.6
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 3.7e-203 712.2 671 58.3
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 4.0e-202 708.8 655 55.7
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 6.7e-189 664.8 475 70.1
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.1e-186 655.6 472 69.9
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 2.6e-185 652.9 650 53.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 6.3e-179 631.7 650 52.8
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.3e-171 607.4 526 61.8
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.2e-167 592.8 538 62.3
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 9.7e-164 581.3 665 46.8
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 7.0e-154 548.5 641 49.5
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.0e-144 518.1 648 46.0
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 3.0e-136 490.0 399 62.9
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 8.1e-126 455.3 648 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.1e-109 401.7 633 38.1
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-103 381.7 400 53.2
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 5.3e-93 346.3 246 70.3
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 4.1e-77 293.5 458 39.1
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.2e-74 282.7 533 35.8
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.3e-62 245.4 624 32.9
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-52 211.8 230 48.7
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.5e-50 203.4 143 72.0
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.8e-48 196.1 177 55.4
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.4e-37 162.2 245 40.0
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.3e-34 151.0 400 30.8
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.5e-31 142.1 98 70.4
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.7e-30 138.7 91 67.0
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 3.1e-29 134.4 109 59.6
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 5.6e-26 123.6 157 45.9
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 9.5e-26 122.9 87 70.1
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 3.9e-19 100.9 117 51.3
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 4.9e-14 84.0 86 52.3
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 8.3e-14 83.2 74 59.5
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.1e-13 82.8 70 60.0
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.9e-13 82.0 70 55.7
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 6.0e-12 77.0 76 56.6


User provided reference genes

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