Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 3.3e-75 285.8 152 100.0
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.2e-61 240.7 152 86.2
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 4.6e-61 238.8 152 86.2
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 6.0e-61 238.4 154 85.1
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.0e-60 237.7 154 85.1
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.3e-60 237.3 155 83.9
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 5.1e-60 235.3 151 81.5
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 8.7e-60 234.6 149 85.9
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 8.7e-60 234.6 150 84.0
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.5e-59 233.8 149 85.9
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.5e-59 233.8 150 84.0
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 1.9e-59 233.4 145 87.6
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.9e-59 233.4 153 83.0
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 1.9e-59 233.4 149 85.9
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 2.5e-59 233.0 152 84.2
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.3e-59 232.6 152 83.6
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.3e-59 232.6 149 85.2
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 3.3e-59 232.6 152 83.6
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 5.6e-59 231.9 149 85.9
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 5.6e-59 231.9 152 82.9
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 7.4e-59 231.5 150 86.0
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 7.4e-59 231.5 152 82.2
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 9.6e-59 231.1 149 84.6
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 9.6e-59 231.1 149 84.6
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.3e-58 230.7 148 83.1
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.6e-58 230.3 150 84.0
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.1e-58 229.9 148 83.8
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 2.1e-58 229.9 152 82.2
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 2.8e-58 229.6 146 84.2
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 3.7e-58 229.2 149 83.9
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 4.8e-58 228.8 146 84.2
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 6.2e-58 228.4 149 83.2
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 6.2e-58 228.4 153 82.4
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 6.2e-58 228.4 153 81.0
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 6.2e-58 228.4 147 83.0
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 6.2e-58 228.4 150 82.0
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 8.1e-58 228.0 153 83.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 8.1e-58 228.0 153 83.0
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.4e-57 227.3 150 84.0
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.8e-57 226.9 149 83.2
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 3.1e-57 226.1 132 90.9
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 3.1e-57 226.1 146 81.5
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 3.1e-57 226.1 145 83.4
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 5.3e-57 225.3 152 82.9
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 6.9e-57 224.9 153 80.4
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 9.0e-57 224.6 150 80.7
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.0e-56 223.4 144 86.8
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 2.6e-56 223.0 145 84.8
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 2.6e-56 223.0 149 80.5
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 3.4e-56 222.6 150 82.0
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 3.4e-56 222.6 141 83.7
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 4.5e-56 222.2 153 79.7
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 4.5e-56 222.2 148 81.1
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 4.5e-56 222.2 146 81.5
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 5.8e-56 221.9 144 81.2
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 5.8e-56 221.9 149 83.2
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.8e-56 221.9 150 80.7
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.6e-56 221.5 144 81.9
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 7.6e-56 221.5 144 81.9
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 1.0e-55 221.1 153 81.0
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 1.3e-55 220.7 150 80.7
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 149 79.9
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.7e-55 220.3 144 86.1
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.2e-55 219.9 144 82.6
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 2.2e-55 219.9 150 80.0
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.2e-55 219.9 152 84.2
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 3.8e-55 219.2 150 78.7
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 3.8e-55 219.2 150 78.7
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 8.4e-55 218.0 150 79.3
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 8.4e-55 218.0 153 79.1
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 8.4e-55 218.0 140 84.3
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.1e-54 217.6 134 88.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.9e-54 216.9 150 80.7
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.9e-54 216.9 149 77.9
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 1.9e-54 216.9 152 78.3
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.9e-54 216.9 146 81.5
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 2.5e-54 216.5 155 80.0
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 2.5e-54 216.5 133 88.7
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.5e-54 216.5 148 77.7
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 3.2e-54 216.1 147 80.3
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.2e-54 216.1 149 78.5
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 4.2e-54 215.7 149 78.5
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.5e-54 215.3 149 78.5
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 9.3e-54 214.5 151 80.8
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.2e-53 214.2 149 79.9
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.2e-53 214.2 133 87.2
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.6e-53 213.8 150 77.3
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 1.6e-53 213.8 152 78.3
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.7e-53 213.0 149 77.2
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 7.9e-53 211.5 148 76.4
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 7.9e-53 211.5 142 81.7
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 7.9e-53 211.5 142 81.7
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.3e-52 210.7 148 79.7
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.8e-52 210.3 152 75.7
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.0e-52 209.5 138 84.1
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 3.0e-52 209.5 145 77.9
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 3.0e-52 209.5 148 78.4
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 3.0e-52 209.5 148 78.4
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 3.9e-52 209.1 132 87.1
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 1.5e-51 207.2 150 76.7
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 1.5e-51 207.2 144 80.6
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.9e-51 206.8 161 73.9
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.9e-51 206.8 151 77.5
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 2.5e-51 206.5 135 84.4
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 7.4e-51 204.9 154 75.3
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 9.6e-51 204.5 148 77.0
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.3e-50 204.1 152 76.3
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.3e-50 204.1 145 76.6
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.6e-50 203.8 151 77.5
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.6e-50 203.8 151 77.5
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.6e-50 203.8 151 77.5
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.6e-50 203.8 130 86.2
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.1e-50 203.4 157 73.9
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.1e-50 203.4 157 73.9
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 3.7e-50 202.6 154 74.7
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 3.7e-50 202.6 154 74.7
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 4.8e-50 202.2 162 70.4
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 4.8e-50 202.2 162 70.4
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 6.3e-50 201.8 154 75.3
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 8.2e-50 201.4 153 74.5
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.4e-49 200.7 148 76.4
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.4e-49 200.7 129 82.9
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 3.1e-49 199.5 148 76.4
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 3.1e-49 199.5 162 71.0
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 6.9e-49 198.4 148 77.0
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.4e-46 190.7 151 74.8
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.5e-46 189.9 141 78.0
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 7.2e-46 188.3 144 74.3
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 1.2e-45 187.6 147 71.4
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 6.1e-45 185.3 147 68.7
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.3e-44 184.1 147 68.7
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 6.7e-44 181.8 156 69.2
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.2e-40 171.0 151 64.9
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 2.6e-40 169.9 131 73.3
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 7.7e-40 168.3 139 64.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.5e-39 165.2 114 80.7
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.5e-35 154.1 121 75.2
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.1e-33 147.9 153 61.4
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 9.1e-33 144.8 119 65.5
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 5.9e-32 142.1 92 90.2
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.3e-31 141.0 133 62.4
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.4e-28 131.0 127 59.1
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.8e-28 130.6 108 67.6
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.7e-27 125.6 112 64.3
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 1.2e-24 117.9 136 54.4
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 5.9e-24 115.5 107 60.7
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 6.5e-23 112.1 140 53.6
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.1e-21 107.1 79 63.3
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 6.1e-21 105.5 150 52.7
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 2.3e-20 103.6 90 70.0
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 2.3e-20 103.6 90 70.0
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 3.7e-18 96.3 86 67.4
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 7.7e-16 88.6 66 84.8
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.7e-15 87.4 72 72.2
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 8.5e-15 85.1 64 81.2
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 5.9e-08 62.4 60 46.7
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 3.8e-07 59.7 39 76.9


User provided reference genes

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