Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.3e-209 733.8 461 100.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 1.0e-121 441.8 464 69.2
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.8e-121 439.9 464 68.8
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 9.5e-112 408.7 390 73.3
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.7e-105 387.9 399 72.2
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 5.6e-104 382.9 472 64.2
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.3e-100 371.7 398 69.8
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 3.6e-95 353.6 466 61.2
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 6.2e-95 352.8 453 61.6
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.1e-94 352.1 448 60.5
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 3.1e-94 350.5 415 64.3
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 4.0e-94 350.1 415 64.3
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.9e-91 341.3 429 61.3
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 3.2e-91 340.5 397 66.8
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 5.4e-91 339.7 463 60.9
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 5.4e-91 339.7 372 65.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.1e-90 337.8 407 64.6
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 3.5e-90 337.0 471 58.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 6.0e-90 336.3 380 65.0
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.7e-89 334.7 399 63.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.1e-88 332.0 366 67.8
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 2.5e-88 330.9 372 65.9
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 2.3e-86 324.3 372 65.1
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 2.0e-85 321.2 380 64.2
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 2.9e-84 317.4 458 57.6
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 2.9e-84 317.4 442 58.4
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 6.4e-84 316.2 462 58.7
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 7.8e-82 309.3 373 48.8
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 1.7e-81 308.1 373 48.5
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 1.7e-81 308.1 421 61.3
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 2.5e-80 304.3 373 48.0
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 2.5e-80 304.3 373 48.0
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.6e-79 301.6 465 55.1
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 2.8e-79 300.8 342 67.5
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 2.8e-79 300.8 462 54.8
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 4.7e-79 300.1 441 57.4
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 8.1e-79 299.3 406 60.8
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.4e-78 298.5 408 58.1
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 2.6e-77 294.3 464 56.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 4.9e-76 290.0 361 65.7
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 8.4e-76 289.3 381 52.2
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.1e-75 288.9 341 66.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.2e-75 287.3 391 45.8
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.0e-73 282.3 371 60.1
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.5e-72 278.5 377 58.6
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.9e-72 278.1 326 71.5
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 9.6e-72 275.8 363 60.3
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.3e-71 275.4 373 58.2
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.6e-71 275.0 259 59.1
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 8.1e-71 272.7 384 59.9
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 2.4e-70 271.2 403 56.8
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 2.6e-69 267.7 374 62.3
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 3.4e-69 267.3 371 59.8
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 4.5e-69 266.9 260 58.5
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 6.4e-68 263.1 373 60.6
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 2.4e-67 261.2 409 56.2
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.4e-67 261.2 259 57.5
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.0e-65 254.2 382 55.8
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 1.1e-64 252.3 254 55.5
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 3.3e-64 250.8 168 71.4
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 3.3e-64 250.8 196 64.3
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 5.6e-64 250.0 256 54.7
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 7.4e-64 249.6 344 60.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 1.3e-63 248.8 188 64.9
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 4.8e-63 246.9 259 54.4
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.2e-61 242.3 255 52.2
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.6e-61 241.1 241 52.7
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 5.8e-61 240.0 254 52.4
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.7e-60 238.4 325 62.5
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 8.4e-60 236.1 169 67.5
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 3.2e-59 234.2 263 52.5
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 3.3e-56 224.2 170 64.1
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 5.6e-56 223.4 177 58.8
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.0e-53 214.9 230 50.4
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.3e-52 212.2 160 63.1
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 3.8e-52 210.7 171 57.9
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.6e-47 195.3 242 71.9
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 9.0e-46 189.5 168 58.9
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.2e-45 189.1 118 73.7
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 7.9e-42 176.4 138 55.8
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.1e-41 173.7 373 51.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.7e-39 167.5 110 70.9
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 8.2e-39 166.4 129 57.4
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.7e-37 159.8 124 58.1
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 2.9e-36 157.9 89 82.0
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 2.5e-35 154.8 160 48.8
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 2.7e-34 151.4 125 56.8
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 2.7e-34 151.4 125 56.8
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 3.3e-32 144.4 403 37.7
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 1.9e-27 128.6 153 43.1
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 1.0e-25 122.9 169 40.2
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 3.7e-23 114.4 207 69.6
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 6.3e-23 113.6 368 43.2
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.1e-22 111.3 73 72.6
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 7.0e-22 110.2 128 43.8
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 7.2e-19 100.1 113 41.6
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.8e-17 95.5 64 67.2
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 4.5e-13 80.9 172 35.5
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 1.0e-12 79.7 83 44.6
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 2.7e-10 71.6 129 31.0
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 7.5e-08 63.5 139 28.1
A10p05290 Brassica napus HOM05D007128 ORTHO05D009059 3.7e-07 61.2 137 27.7
THA.LOC104826248 Tarenaya hassleriana HOM05D007128 ORTHO05D009059 3.7e-07 61.2 139 29.5
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 4.8e-07 60.8 123 27.6
BraA10t42794Z Brassica rapa HOM05D007128 ORTHO05D009059 8.3e-07 60.1 137 27.7
CARHR006390 Cardamine hirsuta HOM05D007128 ORTHO05D009059 8.3e-07 60.1 139 27.3
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 8.3e-07 60.1 139 26.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 8.3e-07 60.1 123 28.5
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 8.3e-07 60.1 156 28.8
C05p04890 Brassica napus HOM05D007128 ORTHO05D009059 1.1e-06 59.7 137 28.5
BolC5t29261H Brassica oleracea HOM05D007128 ORTHO05D009059 1.1e-06 59.7 137 28.5
Thhalv10006683m.g Eutrema salsugineum HOM05D007128 ORTHO05D009059 1.1e-06 59.7 139 25.9
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 1.4e-06 59.3 140 25.7
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 1.8e-06 58.9 159 28.9
Carub.0001s0604 Capsella rubella HOM05D007128 ORTHO05D009059 2.4e-06 58.5 139 26.6
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 3.1e-06 58.2 134 29.9
Aa31LG1G7750 Aethionema arabicum HOM05D007128 ORTHO05D009059 4.1e-06 57.8 139 26.6
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 4.1e-06 57.8 134 26.1
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 4.1e-06 57.8 50 54.0
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 4.1e-06 57.8 146 29.5
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 4.1e-06 57.8 137 27.0
Sp1g05440 Schrenkiella parvula HOM05D007128 ORTHO05D009059 5.4e-06 57.4 139 26.6
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 5.4e-06 57.4 134 28.4
A05p32770 Brassica napus HOM05D002444 ORTHO05D040376 7.0e-06 57.0 54 40.7
BraA05t22099Z Brassica rapa HOM05D002444 ORTHO05D040376 7.0e-06 57.0 54 40.7
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 7.0e-06 57.0 134 26.9
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 9.1e-06 56.6 134 26.9
CsaV3_6G003710 Cucumis sativus L. HOM05D007128 ORTHO05D009059 9.1e-06 56.6 184 25.0
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 9.1e-06 56.6 135 24.4
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 9.1e-06 56.6 181 29.8


User provided reference genes

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