Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 9.5e-119 430.3 228 100.0
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.4e-53 213.8 202 59.9
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.2e-50 202.6 172 55.8
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.2e-50 202.2 182 54.9
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 5.5e-50 201.8 199 52.3
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 9.4e-50 201.1 182 54.9
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-49 199.5 182 53.8
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 2.0e-47 193.4 215 56.7
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 7.5e-47 191.4 186 48.9
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.7e-46 189.1 200 49.5
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.3e-46 188.0 197 51.8
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 1.1e-45 187.6 125 67.2
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.8e-45 186.8 134 60.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 7.0e-45 184.9 186 51.6
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 9.1e-45 184.5 200 47.0
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 4.5e-44 182.2 199 52.8
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-43 180.6 184 50.0
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.2e-43 179.9 161 54.0
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 2.9e-43 179.5 186 51.6
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 3.8e-43 179.1 183 49.2
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 6.5e-43 178.3 193 47.2
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 8.5e-43 177.9 189 48.7
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.1e-42 177.6 210 48.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 1.5e-42 177.2 180 55.6
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 4.2e-42 175.6 202 44.6
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 4.2e-42 175.6 184 47.3
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 5.5e-42 175.3 199 53.8
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 9.4e-42 174.5 197 46.7
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.6e-41 173.7 198 44.4
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.1e-41 173.3 199 44.2
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 4.7e-41 172.2 211 44.5
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.1e-41 171.8 193 44.6
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.1e-41 171.8 193 44.6
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 8.0e-41 171.4 125 58.4
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 1.4e-40 170.6 211 49.8
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.4e-40 170.6 134 54.5
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.4e-40 170.6 170 49.4
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.3e-40 169.9 161 51.6
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 2.3e-40 169.9 193 44.0
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 2.3e-40 169.9 189 51.9
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 5.2e-40 168.7 184 47.3
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 5.2e-40 168.7 124 58.9
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 5.2e-40 168.7 131 55.7
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 5.2e-40 168.7 177 45.2
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 6.8e-40 168.3 178 47.2
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.2e-39 167.5 203 42.4
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 2.6e-39 166.4 129 55.0
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 5.7e-39 165.2 191 53.9
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 5.7e-39 165.2 125 55.2
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.8e-38 162.9 184 45.7
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.7e-38 162.5 177 46.3
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.1e-37 161.0 128 58.6
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.1e-37 161.0 127 56.7
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.4e-37 160.6 210 51.4
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.4e-37 160.6 133 53.4
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 3.1e-37 159.5 131 53.4
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 4.1e-37 159.1 173 51.4
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 4.5e-36 155.6 133 51.1
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.0e-35 154.5 111 56.8
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.3e-35 154.1 189 40.2
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.3e-35 154.1 131 52.7
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.7e-35 153.7 175 51.4
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.9e-35 152.9 126 50.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 3.8e-35 152.5 131 52.7
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 5.0e-35 152.1 131 52.7
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 5.0e-35 152.1 131 52.7
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.6e-35 151.8 121 54.5
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 6.6e-35 151.8 131 52.7
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 6.6e-35 151.8 131 52.7
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 8.6e-35 151.4 173 46.8
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 8.6e-35 151.4 127 53.5
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.1e-34 151.0 181 44.8
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.5e-34 150.6 111 55.9
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.5e-34 150.6 125 48.8
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 1.9e-34 150.2 98 65.3
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 2.5e-34 149.8 133 51.9
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.3e-34 149.4 203 42.9
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 4.2e-34 149.1 100 60.0
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 9.5e-34 147.9 162 48.1
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.1e-33 146.7 190 39.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.1e-33 145.2 133 45.9
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.0e-32 144.4 132 48.5
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.3e-32 143.3 130 51.5
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.3e-32 143.3 121 52.1
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 6.8e-32 141.7 134 48.5
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 8.9e-32 141.4 136 47.1
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 3.4e-31 139.4 132 43.9
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.4e-31 139.4 110 51.8
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 4.4e-31 139.0 114 51.8
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 5.7e-31 138.7 101 60.4
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 7.5e-31 138.3 178 44.4
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 7.5e-31 138.3 136 48.5
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 9.8e-31 137.9 131 46.6
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-30 137.5 165 46.7
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 8.3e-30 134.8 105 53.3
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 8.3e-30 134.8 116 51.7
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.4e-29 134.0 114 48.2
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.4e-29 134.0 186 40.3
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.4e-29 134.0 175 41.1
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 1.8e-29 133.7 175 39.4
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.8e-29 133.7 130 44.6
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.1e-29 132.5 102 55.9
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 4.1e-29 132.5 117 48.7
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.4e-29 132.1 102 55.9
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 9.2e-29 131.3 130 51.5
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.2e-28 131.0 130 45.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.0e-28 130.2 130 44.6
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 5.9e-28 128.6 130 44.6
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.0e-27 127.9 108 47.2
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.7e-27 127.1 106 48.1
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.3e-27 126.7 132 44.7
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.9e-27 125.9 178 36.5
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 3.9e-27 125.9 112 48.2
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 5.0e-27 125.6 126 42.9
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 8.6e-27 124.8 178 34.8
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-26 124.4 179 34.6
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 1.9e-26 123.6 106 50.9
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 3.3e-26 122.9 116 48.3
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 9.5e-26 121.3 108 47.2
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.6e-25 120.6 115 45.2
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.6e-25 120.6 102 48.0
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 2.8e-25 119.8 105 46.7
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 2.8e-25 119.8 98 52.0
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.8e-25 119.8 179 35.8
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 3.6e-25 119.4 114 44.7
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 8.0e-25 118.2 105 46.7
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 8.0e-25 118.2 208 37.0
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 8.0e-25 118.2 155 35.5
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 1.4e-24 117.5 108 45.4
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 1.5e-23 114.0 113 41.6
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.5e-23 114.0 124 44.4
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.0e-23 113.6 121 45.5
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 7.5e-23 111.7 101 45.5
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.5e-23 111.7 115 47.0
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 7.5e-23 111.7 115 46.1
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 9.8e-23 111.3 101 49.5
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 9.8e-23 111.3 101 49.5
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 9.8e-23 111.3 101 49.5
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 9.8e-23 111.3 101 49.5
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 9.8e-23 111.3 101 48.5
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.7e-22 109.4 101 46.5
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 3.7e-22 109.4 101 48.5
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 3.7e-22 109.4 97 49.5
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.7e-22 109.4 97 49.5
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.7e-22 109.4 92 51.1
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 6.4e-22 108.6 101 47.5
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 6.4e-22 108.6 95 53.7
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 6.4e-22 108.6 100 53.0
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 6.4e-22 108.6 121 40.5
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.1e-21 107.8 101 46.5
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.1e-21 107.8 85 52.9
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.1e-21 107.8 115 45.2
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.4e-21 107.5 98 48.0
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 1.9e-21 107.1 109 42.2
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.9e-21 107.1 97 51.5
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.4e-21 106.7 95 47.4
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.4e-21 106.7 101 43.6
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 4.1e-21 105.9 95 46.3
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 7.0e-21 105.1 102 44.1
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 2.7e-20 103.2 86 48.8
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 6.0e-20 102.1 92 50.0
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 7.8e-20 101.7 91 47.3
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 5.0e-19 99.0 82 47.6
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 6.6e-19 98.6 87 48.3
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 8.6e-19 98.2 133 39.8
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.6e-19 98.2 112 42.0
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 8.6e-19 98.2 92 46.7
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.1e-18 97.8 101 43.6
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.3e-18 96.3 97 43.3
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 4.3e-18 95.9 100 44.0
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.3e-18 95.1 100 44.0
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 1.1e-16 91.3 68 64.7
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.1e-16 89.7 99 41.4
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 2.0e-15 87.0 98 43.9
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 3.4e-15 86.3 66 51.5
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 4.6e-12 75.9 115 39.1
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.4e-07 59.7 70 40.0
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 4.4e-07 59.3 105 31.4
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 4.4e-07 59.3 134 43.3
Potri.010G141201 Populus trichocarpa HOM05D034698 ORTHO05D036489 5.8e-07 58.9 81 49.4
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 7.6e-07 58.5 70 40.0
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 7.6e-07 58.5 81 40.7
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 7.6e-07 58.5 81 40.7
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 2.9e-06 56.6 73 32.9
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 8.4e-06 55.1 71 36.6


User provided reference genes

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