Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G200250 Manihot esculenta HOM05D006893 ORTHO05D008495 9.9e-145 516.9 292 100.0
Manes.15G008800 Manihot esculenta HOM05D006893 ORTHO05D008495 2.9e-67 259.6 287 62.0
Potri.010G005300 Populus trichocarpa HOM05D006893 ORTHO05D008495 1.4e-66 257.3 278 52.5
TWI53G1979 Tripterygium wilfordii HOM05D006893 ORTHO05D008495 2.5e-63 246.5 251 57.4
Sabra10G0004500 Salix brachista HOM05D006893 ORTHO05D008495 3.6e-62 242.7 280 51.4
CiPaw.01G144100 Carya illinoinensis HOM05D006893 ORTHO05D008495 1.2e-60 237.7 264 54.5
Prupe.1G129100 Prunus persica HOM05D006893 ORTHO05D008495 2.5e-55 219.9 265 59.2
TWI09G0148 Tripterygium wilfordii HOM05D006893 ORTHO05D008495 7.3e-55 218.4 309 46.9
TAR362G0125 Trochodendron aralioides HOM05D006893 ORTHO05D008495 3.6e-54 216.1 258 54.7
Cpa.g.sc9.112 Carica papaya HOM05D006893 ORTHO05D008495 6.8e-53 211.8 271 52.4
Thecc.04G291400 Theobroma cacao HOM05D006893 ORTHO05D008495 4.9e-51 205.7 280 47.5
Duzib212G0998 Durio zibethinus HOM05D006893 ORTHO05D008495 3.2e-50 203.0 277 48.7
TAR371G1102 Trochodendron aralioides HOM05D006893 ORTHO05D008495 3.2e-50 203.0 275 51.6
TAR636G3297 Trochodendron aralioides HOM05D006893 ORTHO05D008495 3.2e-50 203.0 275 51.6
Dinv44337 Davidia involucrata HOM05D006893 ORTHO05D008495 1.2e-49 201.1 258 51.6
CiPaw.02G078700 Carya illinoinensis HOM05D006893 ORTHO05D008495 2.1e-49 200.3 259 49.4
Duzib052G0831 Durio zibethinus HOM05D006893 ORTHO05D008495 2.1e-49 200.3 273 49.5
MD16G1161600 Malus domestica HOM05D006893 ORTHO05D008495 3.9e-48 196.1 322 45.0
Hma1.2p1_1352F.1_g277580 Hydrangea macrophylla HOM05D006893 ORTHO05D008495 5.1e-48 195.7 316 44.3
Haze_01136 Corylus avellana HOM05D006893 ORTHO05D008495 9.6e-47 191.4 290 43.1
Cfa015452 Carpinus fangiana HOM05D006893 ORTHO05D008495 1.6e-46 190.7 270 48.9
Actinidia40309 Actinidia chinensis HOM05D006893 ORTHO05D008495 2.1e-46 190.3 275 53.8
TAR365G1113 Trochodendron aralioides HOM05D006893 ORTHO05D008495 3.6e-46 189.5 253 51.8
GSVIVG01035078001 Vitis vinifera HOM05D006893 ORTHO05D008495 1.8e-45 187.2 272 49.6
Nn3g21581 Nelumbo nucifera HOM05D006893 ORTHO05D008495 6.9e-45 185.3 269 47.2
Aqoxy2G02860 Aquilegia oxysepala HOM05D006893 ORTHO05D008495 2.0e-44 183.7 278 42.8
MBI18_g04566_MAGBIO Magnolia biondii HOM05D006893 ORTHO05D008495 2.0e-44 183.7 258 48.8
Ciclev10005318m.g Citrus clementina HOM05D006893 ORTHO05D008495 4.4e-44 182.6 345 39.4
Gohir.D02G056400 Gossypium hirsutum HOM05D006893 ORTHO05D008495 9.9e-44 181.4 307 39.7
Gohir.A02G051500 Gossypium hirsutum HOM05D006893 ORTHO05D008495 6.4e-43 178.7 309 39.5
Nn4g25705 Nelumbo nucifera HOM05D006893 ORTHO05D008495 1.4e-42 177.6 255 47.5
Dinv29707 Davidia involucrata HOM05D006893 ORTHO05D008495 2.4e-42 176.8 293 50.9
Lj6C683T11 Lonicera japonica HOM05D006893 ORTHO05D008495 3.2e-42 176.4 337 40.9
Gorai.005G062300 Gossypium raimondii HOM05D006893 ORTHO05D008495 4.2e-42 176.0 307 38.8
QL06p010948 Quercus lobata HOM05D006893 ORTHO05D008495 7.1e-42 175.3 259 52.1
FvH4_4g18950 Fragaria vesca HOM05D006893 ORTHO05D008495 2.3e-40 170.2 290 49.3
FAN12G3246 Fragaria x ananassa HOM05D006893 ORTHO05D008495 2.3e-40 170.2 290 50.0
FAN12G4353 Fragaria x ananassa HOM05D006893 ORTHO05D008495 2.3e-40 170.2 290 50.0
Cc03_g01320 Coffea canephora HOM05D006893 ORTHO05D008495 1.1e-39 167.9 271 49.4
Oeu033816.1 Olea europaea HOM05D006893 ORTHO05D008495 7.3e-39 165.2 255 45.1
PGR004G1654 Punica granatum HOM05D006893 ORTHO05D008495 7.3e-39 165.2 316 41.1
FAN07G1462 Fragaria x ananassa HOM05D006893 ORTHO05D008495 9.6e-39 164.9 283 47.7
Gohir.A10G167700 Gossypium hirsutum HOM05D006893 ORTHO05D008495 8.1e-38 161.8 266 40.6
Rhsim04G0228400 Rhododendron simsii HOM05D006893 ORTHO05D008495 4.0e-37 159.5 304 45.7
Eucgr.H03971 Eucalyptus grandis HOM05D006893 ORTHO05D008495 9.0e-37 158.3 292 49.7
Ca_21468_v3 Cicer arietinum L. HOM05D006893 ORTHO05D008495 2.0e-36 157.1 252 43.7
Ca_21502_v3 Cicer arietinum L. HOM05D006893 ORTHO05D008495 2.0e-36 157.1 252 43.7
arahy.Tifrunner.gnm1.ann1.8F5MWG Arachis hypogaea HOM05D006893 ORTHO05D008495 2.6e-36 156.8 250 44.4
Nitab4.5_0002755g0070 Nicotiana tabacum HOM05D006893 ORTHO05D008495 2.6e-36 156.8 325 38.8
vmacro08097 Vaccinium macrocarpon HOM05D006893 ORTHO05D008495 3.4e-36 156.4 313 45.7
Migut.N00064 Erythranthe guttata HOM05D006893 ORTHO05D008495 1.3e-35 154.5 314 45.9
Lj4g0003398 Lotus japonicus HOM05D006893 ORTHO05D008495 1.7e-35 154.1 296 36.8
Lj4g0016264 Lotus japonicus HOM05D006893 ORTHO05D008495 1.7e-35 154.1 296 36.8
PSO407G0319 Papaver somniferum HOM05D006893 ORTHO05D008495 2.2e-35 153.7 263 49.0
SGA_v2.0_scaffold146G36231 Striga asiatica HOM05D006893 ORTHO05D008495 2.2e-35 153.7 320 33.8
Nitab4.5_0000306g0330 Nicotiana tabacum HOM05D006893 ORTHO05D008495 6.4e-35 152.1 328 38.7
Peaxi162Scf00065g01019 Petunia axillaris HOM05D006893 ORTHO05D008495 1.9e-34 150.6 350 35.1
Duzib151G1176 Durio zibethinus HOM05D006893 ORTHO05D008495 3.2e-34 149.8 236 47.0
RcHm_v2.0_Chr4g0423841 Rosa chinensis HOM05D006893 ORTHO05D008495 4.6e-33 146.0 304 43.1
Glyma.07G244000 Glycine max HOM05D006893 ORTHO05D008495 2.3e-32 143.7 253 43.1
EL10Ac3g04934 Beta vulgaris HOM05D006893 ORTHO05D008495 3.0e-32 143.3 347 42.4
PSO170G0180 Papaver somniferum HOM05D006893 ORTHO05D008495 5.1e-32 142.5 269 44.2
arahy.Tifrunner.gnm1.ann1.IR9GWY Arachis hypogaea HOM05D006893 ORTHO05D008495 6.7e-32 142.1 219 44.7
MD13G1161800 Malus domestica HOM05D006893 ORTHO05D008495 1.1e-31 141.4 350 39.7
VMungo1215G1370 Vigna mungo HOM05D000322 ORTHO05D000186 3.3e-31 139.8 261 42.1
AUR62035073 Chenopodium quinoa HOM05D006893 ORTHO05D008495 1.3e-30 137.9 390 36.9
Oeu016262.1 Olea europaea HOM05D006893 ORTHO05D008495 2.8e-30 136.7 258 43.0
CAN.G14.14 Capsicum annuum HOM05D006893 ORTHO05D008495 3.7e-30 136.3 333 33.6
ECA240G3740 Erigeron canadensis HOM05D006893 ORTHO05D008495 4.8e-30 136.0 220 43.2
Psat4g024920 Pisum sativum HOM05D006893 ORTHO05D008495 1.4e-29 134.4 257 39.7
Lalb_Chr07g0182231 Lupinus albus HOM05D006893 ORTHO05D008495 2.4e-29 133.7 266 36.8
TPR.G4842 Trifolium pratense HOM05D006893 ORTHO05D008495 2.4e-29 133.7 261 40.2
MSTRG.21783 Avicennia marina HOM05D006893 ORTHO05D008495 3.1e-29 133.3 354 33.1
Phvul.003G108900 Phaseolus vulgaris HOM05D006893 ORTHO05D008495 9.0e-29 131.7 252 41.3
DCAR_023309 Daucus carota HOM05D006893 ORTHO05D008495 1.2e-28 131.3 213 46.5
AUR62016159 Chenopodium quinoa HOM05D006893 ORTHO05D008495 2.6e-28 130.2 363 32.8
Hma1.2p1_0013F.1_g009095 Hydrangea macrophylla HOM05D006893 ORTHO05D008495 2.6e-28 130.2 150 62.0
PGSC0003DMG400006243 Solanum tuberosum HOM05D006893 ORTHO05D008495 2.6e-28 130.2 359 37.9
THA.LOC104823747 Tarenaya hassleriana HOM05D006893 ORTHO05D008495 2.9e-27 126.7 432 29.9
Solyc01g065690.3 Solanum lycopersicum HOM05D006893 ORTHO05D008495 4.9e-27 125.9 384 33.3
Hund03092 Selenicereus undatus HOM05D006893 ORTHO05D008495 1.1e-26 124.8 368 37.5
CANSAT78G1743 Cannabis sativa HOM05D006893 ORTHO05D008495 1.9e-26 124.0 367 33.2
CsaV3_3G014950 Cucumis sativus L. HOM05D006893 ORTHO05D008495 1.9e-26 124.0 382 29.1
ClCG05G006320 Citrullus lanatus HOM05D006893 ORTHO05D008495 2.4e-26 123.6 351 35.3
HanXRQChr03g0084941 Helianthus annuus HOM05D006893 ORTHO05D008495 2.4e-26 123.6 209 47.8
Lsat_1_v5_gn_3_21921 Lactuca sativa HOM05D006893 ORTHO05D008495 2.4e-26 123.6 214 43.9
MBI19_g05148_MAGBIO Magnolia biondii HOM05D006893 ORTHO05D008495 4.2e-26 122.9 268 39.6
PSO357G0434 Papaver somniferum HOM05D006893 ORTHO05D008495 7.1e-26 122.1 360 37.5
Medtr4g120750 Medicago truncatula HOM05D006893 ORTHO05D008495 9.3e-26 121.7 262 37.4
MELO3C006691.2 Cucumis melo HOM05D006893 ORTHO05D008495 1.2e-25 121.3 376 29.0
Glyma.17G029900 Glycine max HOM05D006893 ORTHO05D008495 6.0e-25 119.0 253 43.5
PSO170G5603 Papaver somniferum HOM05D006893 ORTHO05D008495 2.3e-24 117.1 355 36.9
Gorai.011G194300 Gossypium raimondii HOM05D006893 ORTHO05D008495 9.6e-23 111.7 264 36.4
Oeu028327.1 Olea europaea HOM05D006893 ORTHO05D008495 1.3e-22 111.3 154 45.5
Atru.chr4.2934 Acer truncatum HOM05D006893 ORTHO05D008495 2.1e-22 110.5 57 87.7
MSTRG.3881 Avicennia marina HOM05D006893 ORTHO05D008495 2.1e-22 110.5 250 34.4
CDE11G0221 Ceratophyllum demersum HOM05D006893 ORTHO05D008495 3.7e-22 109.8 264 33.0
CDE05G0963 Ceratophyllum demersum HOM05D006893 ORTHO05D008495 4.8e-22 109.4 262 33.2
Aqoxy22s005 Aquilegia oxysepala HOM05D006893 ORTHO05D008495 8.2e-22 108.6 57 84.2
Gohir.D10G173750 Gossypium hirsutum HOM05D006893 ORTHO05D008495 1.4e-21 107.8 264 36.0
SalBow2G1430 Salvia bowleyana HOM05D006893 ORTHO05D008495 1.2e-20 104.8 279 38.0
Sopen01g027090 Solanum pennellii HOM05D006893 ORTHO05D008495 2.6e-20 103.6 373 31.9
ECA246G0139 Erigeron canadensis HOM05D006893 ORTHO05D008495 4.5e-20 102.8 211 35.1
COL.COLO4_34693 Corchorus olitorius HOM05D006893 ORTHO05D008495 5.8e-20 102.4 57 80.7
Sed0012680 Sechium edule HOM05D006893 ORTHO05D008495 5.8e-20 102.4 412 26.7
ATR0693G301 Amborella trichopoda HOM05D006893 ORTHO05D008495 4.2e-18 96.3 261 41.0
Glyma.15G146700 Glycine max HOM05D006893 ORTHO05D008495 1.8e-16 90.9 187 46.0
Ah.04g155120 Amaranthus hybridus HOM05D006893 ORTHO05D008495 1.5e-15 87.8 322 34.5
PGR031G0547 Punica granatum HOM05D006893 ORTHO05D008495 4.3e-15 86.3 58 69.0
CSS0018997 Camellia sinensis var. sinensis HOM05D006893 ORTHO05D008495 7.4e-15 85.5 160 41.2
arahy.Tifrunner.gnm1.ann1.RE2MDR Arachis hypogaea HOM05D006893 ORTHO05D008495 3.7e-14 83.2 73 57.5
Os01g0309800 Oryza sativa ssp. japonica HOM05D006893 ORTHO05D008495 4.8e-14 82.8 259 31.3
arahy.Tifrunner.gnm1.ann1.A55GHP Arachis hypogaea HOM05D006893 ORTHO05D008495 2.6e-12 77.0 57 64.9
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 3.2e-10 70.1 56 53.6
Atru.chr6.1928 Acer truncatum HOM05D000262 ORTHO05D000300 9.7e-07 58.5 43 55.8
TWI63G1327 Tripterygium wilfordii HOM05D000262 ORTHO05D000300 9.7e-07 58.5 45 57.8
Zm00001eb130400 Zea mays HOM05D006893 ORTHO05D008495 9.7e-07 58.5 272 32.7
Sabra04G0036700 Salix brachista HOM05D000262 ORTHO05D000300 1.3e-06 58.2 43 53.5
THA.LOC104805828 Tarenaya hassleriana HOM05D006893 ORTHO05D008495 1.3e-06 58.2 246 30.1
Manes.17G055500 Manihot esculenta HOM05D000262 ORTHO05D000300 2.2e-06 57.4 43 58.1
SEGI_03375 Sequoiadendron giganteum HOM05D064531 ORTHO05D050945 2.8e-06 57.0 48 47.9
Ciclev10033767m.g Citrus clementina HOM05D000262 ORTHO05D000300 3.7e-06 56.6 43 55.8
Potri.011G065600 Populus trichocarpa HOM05D000262 ORTHO05D000300 3.7e-06 56.6 43 53.5
MBI07_g03180_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 4.8e-06 56.2 43 58.1
GSVIVG01021208001 Vitis vinifera HOM05D000262 ORTHO05D000300 4.8e-06 56.2 43 53.5
Glyma.05G157900 Glycine max HOM05D000262 ORTHO05D000300 6.3e-06 55.8 43 55.8
Potri.004G056800 Populus trichocarpa HOM05D000262 ORTHO05D000300 6.3e-06 55.8 43 53.5
MBI06_g26013_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 8.2e-06 55.5 43 55.8
unitig_748.g8718 Utricularia gibba HOM05D006893 ORTHO05D008495 8.2e-06 55.5 76 39.5


User provided reference genes

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