Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 1.8e-250 869.0 507 100.0
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 5.1e-205 718.0 508 83.1
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 2.6e-148 529.6 531 64.8
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 3.1e-146 522.7 504 68.3
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 5.4e-146 521.9 521 61.6
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 1.3e-144 517.3 511 65.6
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.9e-143 513.5 522 61.5
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.8e-141 506.9 519 61.8
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 2.3e-141 506.5 521 61.2
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 1.8e-138 496.9 524 63.7
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 4.6e-137 492.3 521 64.9
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 2.3e-136 490.0 525 62.9
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 8.6e-136 488.0 523 62.5
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 2.1e-134 483.4 520 60.6
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 1.5e-132 477.2 526 58.9
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 3.7e-131 472.6 473 65.8
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 3.7e-131 472.6 469 62.0
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.9e-131 472.2 526 62.7
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 4.7e-126 455.7 472 64.6
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 9.8e-124 448.0 525 58.9
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 2.2e-123 446.8 526 53.6
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 1.6e-121 440.7 517 59.4
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 4.6e-121 439.1 535 57.4
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.0e-120 438.0 529 56.1
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.6e-119 432.2 531 55.7
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.2e-118 431.0 515 57.3
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.6e-118 430.6 517 60.2
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.1e-117 427.9 505 59.6
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.1e-117 427.9 518 57.5
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.0e-117 426.0 505 59.4
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 3.4e-116 422.9 514 53.9
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 5.8e-116 422.2 545 55.0
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 8.4e-115 418.3 537 56.6
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 3.0e-112 409.8 523 56.4
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 1.2e-110 404.4 519 52.0
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 2.1e-110 403.7 507 53.8
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 6.2e-110 402.1 507 54.0
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 6.2e-110 402.1 507 54.0
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 1.4e-106 391.0 523 49.9
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 7.1e-106 388.7 471 55.0
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 7.1e-106 388.7 551 49.7
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 1.2e-105 387.9 526 51.3
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 2.7e-105 386.7 477 54.5
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 4.6e-105 386.0 478 60.5
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 4.6e-105 386.0 540 49.1
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 6.0e-105 385.6 550 48.9
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 3.9e-104 382.9 476 59.0
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 4.3e-103 379.4 562 46.6
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 5.6e-103 379.0 520 49.6
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 2.8e-102 376.7 527 49.3
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 6.2e-102 375.6 548 50.7
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 8.1e-102 375.2 539 48.8
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 8.1e-102 375.2 505 51.7
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 8.1e-102 375.2 542 47.6
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 1.4e-101 374.4 525 49.9
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.8e-101 374.0 536 47.9
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.8e-101 374.0 469 52.5
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 4.0e-101 372.9 534 47.4
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 6.9e-101 372.1 514 56.2
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.5e-100 370.9 508 52.2
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 2.0e-100 370.5 517 52.4
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 2.6e-100 370.2 487 50.7
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 3.8e-99 366.3 468 57.3
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 4.9e-99 365.9 527 49.5
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 8.4e-99 365.2 544 47.8
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 5.4e-98 362.5 512 48.0
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 2.3e-96 357.1 516 54.3
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 3.0e-96 356.7 531 51.2
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 3.9e-96 356.3 536 49.8
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 6.6e-96 355.5 523 48.4
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 1.3e-94 351.3 529 51.0
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 3.6e-94 349.7 473 50.7
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 8.1e-94 348.6 537 46.7
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 1.4e-93 347.8 523 54.1
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 1.8e-93 347.4 534 47.6
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 1.8e-93 347.4 517 53.6
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 2.6e-92 343.6 523 48.9
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 7.6e-92 342.0 472 57.4
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 1.1e-90 338.2 522 48.7
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 1.9e-90 337.4 457 53.6
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 7.1e-90 335.5 472 49.4
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 1.2e-89 334.7 559 44.0
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 1.6e-89 334.3 513 51.7
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.6e-89 334.3 529 49.7
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 1.6e-89 334.3 544 50.6
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 2.1e-89 334.0 514 48.4
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 2.1e-89 334.0 457 53.2
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 3.5e-89 333.2 493 50.7
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 1.0e-88 331.6 463 54.9
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 5.1e-88 329.3 488 56.4
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 5.6e-87 325.9 526 52.5
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 8.1e-86 322.0 525 45.9
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 2.7e-81 307.0 438 49.1
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 5.7e-79 299.3 570 44.9
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 2.8e-78 297.0 528 45.8
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 4.3e-71 273.1 526 42.0
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 7.4e-71 272.3 346 57.5
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 6.3e-70 269.2 296 52.7
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 1.1e-69 268.5 521 42.0
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.1e-66 258.5 411 45.7
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 6.1e-65 252.7 290 60.3
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.0e-64 251.9 305 51.5
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 9.7e-63 245.4 291 51.2
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 1.1e-61 241.9 506 43.1
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 8.5e-59 232.3 305 52.5
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 3.2e-58 230.3 523 37.1
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 2.3e-56 224.2 296 49.3
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 2.0e-55 221.1 538 39.6
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 1.1e-53 215.3 583 36.2
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 5.9e-52 209.5 462 39.2
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 1.0e-48 198.7 517 41.6
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 4.5e-44 183.3 433 35.8
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 6.3e-38 162.9 156 57.7
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.4e-37 161.0 181 59.1
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 1.5e-34 151.8 137 65.7
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 7.2e-34 149.4 164 57.9
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.2e-30 137.9 153 59.5
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 5.9e-28 129.8 146 48.6
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.0e-27 129.0 72 86.1
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 3.6e-25 120.6 72 81.9
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 3.0e-24 117.5 168 54.8
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 2.3e-16 91.3 96 51.0
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 4.0e-16 90.5 94 61.7
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 7.5e-15 86.3 160 34.4
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 2.2e-14 84.7 93 49.5
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-11 74.7 84 40.5
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 2.5e-10 71.2 562 25.3
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 6.2e-09 66.6 85 35.3
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.2e-06 58.2 52 59.6


User provided reference genes

Program Settings