Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 0.0e+00 1221.1 616 100.0
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 4.1e-281 971.1 648 79.8
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 3.6e-189 665.6 607 61.6
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 6.2e-189 664.8 660 58.3
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 2.6e-187 659.4 649 58.4
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 5.5e-185 651.7 608 60.5
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.7e-184 649.4 610 60.0
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 3.3e-182 642.5 651 57.1
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 5.6e-182 641.7 639 58.1
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 3.7e-181 639.0 652 56.3
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 6.9e-180 634.8 675 54.8
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 2.6e-179 632.9 655 55.9
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 4.5e-179 632.1 652 56.6
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 4.2e-177 625.5 662 55.9
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 9.3e-177 624.4 664 54.1
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 8.7e-175 617.8 613 57.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.0e-171 606.7 611 57.0
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.0e-170 604.4 651 54.1
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 2.2e-170 603.2 647 55.3
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.2e-170 603.2 651 54.8
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 8.7e-167 591.3 658 54.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.5e-166 589.7 659 53.4
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 5.7e-166 588.6 651 54.2
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 1.8e-164 583.6 651 54.1
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 2.6e-163 579.7 672 52.1
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.9e-161 573.5 826 44.9
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.5e-161 572.0 645 52.6
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 9.4e-161 571.2 645 52.2
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 3.6e-160 569.3 648 52.3
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 7.9e-160 568.2 646 52.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 7.9e-160 568.2 647 53.2
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.8e-159 567.0 663 51.7
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 3.9e-159 565.8 647 53.3
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.1e-158 564.3 663 51.6
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.6e-158 563.1 645 51.9
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 6.9e-156 555.1 644 50.5
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 2.0e-155 553.5 645 50.5
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 2.7e-152 543.1 654 50.6
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 1.8e-151 540.4 658 50.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 3.0e-151 539.7 650 49.4
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 3.0e-151 539.7 653 51.1
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 5.2e-151 538.9 553 56.1
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 2.0e-150 537.0 670 49.3
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 9.7e-150 534.6 652 49.5
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.2e-149 533.5 667 49.9
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 3.7e-149 532.7 642 49.2
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 6.3e-149 531.9 667 50.1
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.1e-148 531.2 658 50.6
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.1e-148 531.2 647 48.7
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 7.7e-147 525.0 712 46.9
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 1.9e-145 520.4 604 50.7
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 3.2e-145 519.6 662 49.4
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 4.2e-145 519.2 646 48.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 4.2e-145 519.2 604 51.2
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 9.4e-145 518.1 666 48.0
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 1.2e-144 517.7 558 53.8
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.2e-144 517.7 613 49.8
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.1e-144 516.9 673 48.7
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 2.1e-144 516.9 637 52.4
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 3.6e-144 516.2 659 48.6
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.0e-142 510.4 654 49.7
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 4.4e-142 509.2 644 48.0
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 1.3e-141 507.7 648 50.6
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.4e-140 504.2 648 48.5
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.4e-140 504.2 690 45.8
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.8e-140 503.8 616 49.7
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 4.1e-140 502.7 582 50.9
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 3.5e-139 499.6 650 48.2
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 5.9e-139 498.8 650 49.8
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 5.9e-139 498.8 649 49.0
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 5.9e-139 498.8 661 46.3
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 2.9e-138 496.5 648 48.6
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 3.8e-138 496.1 650 49.7
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 3.8e-138 496.1 590 49.7
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.5e-137 494.2 648 48.1
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 3.2e-137 493.0 659 47.3
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 5.5e-137 492.3 645 48.7
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.2e-136 491.1 647 48.7
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.2e-136 491.1 649 48.5
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.6e-136 490.7 652 48.3
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 3.6e-136 489.6 664 47.1
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 5.2e-135 485.7 603 49.9
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 6.8e-135 485.3 649 47.5
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 1.2e-134 484.6 654 47.4
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 2.0e-134 483.8 650 47.4
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 5.7e-134 482.3 665 46.5
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 4.8e-133 479.2 654 46.5
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.4e-132 477.6 640 48.1
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 2.7e-131 473.4 642 47.7
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 3.8e-130 469.5 645 47.1
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 5.0e-130 469.2 636 49.2
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-129 468.0 636 49.1
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.5e-129 467.6 680 45.9
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 9.5e-129 464.9 659 47.3
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.8e-128 463.4 640 46.2
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 1.4e-127 461.1 638 48.3
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.3e-127 460.3 584 47.6
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 3.0e-127 459.9 636 48.7
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 5.2e-127 459.1 637 48.4
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.2e-126 458.0 661 46.1
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.6e-123 447.6 669 43.6
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.3e-122 444.5 653 44.3
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.5e-121 441.0 658 44.8
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.3e-121 439.5 624 45.8
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 2.8e-120 436.8 611 46.5
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 8.9e-119 431.8 583 46.3
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 8.3e-117 425.2 745 40.8
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 3.2e-116 423.3 649 45.9
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 8.6e-114 415.2 630 43.8
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 7.3e-113 412.1 612 45.3
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 7.5e-110 402.1 610 41.8
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 1.4e-108 397.9 631 42.0
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 5.4e-108 396.0 651 41.6
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 5.2e-103 379.4 506 45.5
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.7e-101 374.4 606 41.3
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 9.9e-94 348.6 658 38.1
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-87 328.6 493 45.0
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 7.6e-86 322.4 436 48.4
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.6e-82 309.3 588 37.8
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 5.6e-81 306.2 568 39.1
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 1.2e-70 271.9 621 34.6
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 7.6e-70 269.2 606 33.2
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 7.4e-57 226.1 485 35.1
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-52 212.2 318 42.8
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.6e-51 206.8 624 31.4
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.0e-41 174.9 217 46.5
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.7e-41 172.6 154 62.3
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.4e-39 167.9 191 49.7
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 2.0e-38 164.9 465 31.2
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 5.0e-37 160.2 172 55.8
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.1e-28 132.5 677 26.9
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 4.7e-27 127.1 134 57.5
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.7e-21 108.6 105 50.5
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 2.7e-19 101.3 130 49.2
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 9.1e-15 86.3 616 23.9
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 8.6e-13 79.7 86 57.0
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.3e-08 65.9 59 55.9
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.8e-08 64.7 67 46.3
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 4.9e-08 63.9 73 50.7
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 9.2e-07 59.7 91 37.4
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 9.2e-07 59.7 91 37.4
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 9.2e-07 59.7 91 37.4
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.5e-06 57.8 96 43.8


User provided reference genes

Program Settings