Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.2e-100 369.8 181 100.0
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 9.7e-74 280.4 183 76.0
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 7.7e-71 270.8 191 70.7
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 7.7e-71 270.8 189 72.0
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.2e-70 269.2 184 71.7
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.2e-68 263.5 188 72.3
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 5.2e-67 258.1 183 70.5
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 2.0e-66 256.1 185 71.9
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.2e-65 252.7 187 70.1
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.7e-65 251.9 190 69.5
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 3.7e-65 251.9 191 69.6
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 4.8e-65 251.5 187 70.1
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 4.8e-65 251.5 193 69.9
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.1e-64 250.4 187 67.4
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 3.1e-64 248.8 185 69.7
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 5.3e-64 248.1 186 68.3
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 5.9e-63 244.6 195 63.6
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 7.7e-63 244.2 195 67.7
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 1.3e-62 243.4 186 66.1
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 5.0e-62 241.5 189 66.7
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 2.5e-61 239.2 186 68.3
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.6e-60 236.5 192 67.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.1e-60 236.1 188 64.9
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.1e-60 236.1 196 64.3
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 3.0e-59 232.3 193 62.2
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 4.0e-59 231.9 193 63.2
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 4.0e-59 231.9 187 65.2
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 2.6e-58 229.2 186 62.4
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 2.6e-58 229.2 186 62.4
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 9.7e-58 227.3 184 62.5
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.7e-58 227.3 184 62.5
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.7e-58 227.3 184 62.5
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 6.3e-57 224.6 185 65.4
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 8.3e-57 224.2 183 65.6
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.4e-56 223.4 185 63.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 7.0e-56 221.1 193 64.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.6e-55 219.9 184 60.9
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.5e-55 218.8 188 63.8
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 4.5e-55 218.4 166 67.5
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 5.9e-55 218.0 193 60.6
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.1e-53 213.8 193 61.7
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 2.5e-53 212.6 183 62.3
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 3.2e-53 212.2 184 59.8
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.2e-53 211.8 186 62.4
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 5.5e-53 211.5 184 62.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 5.5e-53 211.5 197 60.4
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.8e-51 206.5 184 59.8
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.8e-51 206.5 198 55.1
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.8e-51 204.5 185 60.0
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.4e-50 202.2 185 58.9
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 9.8e-50 200.7 194 56.7
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 2.8e-49 199.1 185 58.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 3.7e-49 198.7 193 58.0
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.8e-48 196.4 192 55.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.1e-48 195.7 193 58.0
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 7.0e-48 194.5 184 57.6
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.6e-47 193.4 182 57.1
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.0e-47 193.0 184 57.1
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.0e-47 193.0 185 58.4
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.7e-47 192.6 184 57.1
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.5e-47 192.2 191 58.1
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.7e-47 191.0 184 57.1
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.9e-46 189.1 191 57.6
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 6.6e-46 188.0 192 53.1
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 6.6e-46 188.0 184 57.1
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.1e-45 187.2 190 55.8
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.1e-45 187.2 187 57.2
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.5e-45 186.8 187 57.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.3e-45 185.7 194 57.7
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 7.2e-45 184.5 196 57.1
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.1e-44 183.0 205 57.6
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 2.8e-44 182.6 189 56.1
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.6e-44 182.2 191 56.0
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.6e-44 182.2 210 55.2
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 6.1e-44 181.4 210 50.5
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 8.0e-44 181.0 190 52.6
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.4e-43 180.3 191 56.0
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 3.4e-42 175.6 187 52.4
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 7.5e-42 174.5 187 52.9
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 7.5e-42 174.5 186 52.7
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.3e-41 173.7 189 53.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.7e-41 173.3 182 54.4
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 2.8e-41 172.6 191 55.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 3.7e-41 172.2 193 58.0
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.7e-41 172.2 186 51.6
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.4e-40 170.2 196 55.1
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.4e-40 170.2 196 55.1
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 3.1e-40 169.1 191 55.0
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 3.1e-40 169.1 191 55.0
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.1e-40 169.1 181 53.0
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.1e-40 168.7 189 53.4
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 5.4e-40 168.3 184 54.3
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 9.2e-40 167.5 208 54.3
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 9.2e-40 167.5 185 56.2
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 9.2e-40 167.5 191 49.7
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.2e-39 167.2 180 51.7
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 2.0e-39 166.4 184 52.7
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 4.5e-39 165.2 194 53.6
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 4.5e-39 165.2 187 51.3
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 8.6e-38 161.0 190 53.2
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.1e-37 160.6 176 58.0
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-37 160.6 176 58.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-37 160.6 176 58.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.1e-37 160.6 176 58.0
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-37 160.2 213 52.6
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.5e-37 160.2 213 52.6
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 2.5e-37 159.5 218 52.3
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 3.3e-37 159.1 216 51.9
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.3e-37 159.1 188 50.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 4.3e-37 158.7 199 49.7
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 4.3e-37 158.7 123 64.2
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 7.3e-37 157.9 176 57.4
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.2e-36 157.1 180 52.2
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.2e-36 157.1 191 51.3
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.1e-36 156.4 199 52.8
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.8e-36 156.0 198 49.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.8e-36 156.0 202 43.6
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 6.1e-36 154.8 178 55.1
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 6.1e-36 154.8 203 52.2
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 6.1e-36 154.8 207 51.7
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 3.1e-35 152.5 190 50.5
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 5.2e-35 151.8 190 50.5
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 3.7e-33 145.6 183 49.2
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 4.9e-33 145.2 194 46.9
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 6.0e-31 138.3 193 44.0
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 3.9e-30 135.6 204 46.6
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 3.3e-29 132.5 203 47.3
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.6e-28 130.2 206 40.3
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 3.1e-27 125.9 147 51.0
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 5.8e-26 121.7 187 41.7
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 9.8e-26 120.9 190 43.7
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.3e-25 120.6 186 39.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.7e-25 120.2 182 42.9
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.1e-24 117.5 79 78.5
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.4e-24 117.1 181 39.8
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 4.6e-23 112.1 90 65.6
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.8e-23 111.3 97 56.7
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.2e-20 104.0 184 38.0
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 1.6e-20 103.6 199 34.2
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 6.2e-20 101.7 175 38.9
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 5.8e-18 95.1 72 69.4
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 7.5e-18 94.7 157 37.6
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 9.2e-16 87.8 65 66.2
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.8e-11 73.6 38 81.6
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.8e-11 73.6 178 33.7
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 2.4e-11 73.2 180 33.9
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 8.9e-11 71.2 179 33.5
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 3.4e-10 69.3 184 34.2
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 5.8e-10 68.6 152 36.8
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 1.3e-09 67.4 183 29.5
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 1.3e-09 67.4 182 33.0
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.7e-09 67.0 182 31.9
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 2.2e-09 66.6 187 28.9
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 4.9e-09 65.5 180 30.0
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 1.1e-08 64.3 182 31.3
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 1.1e-08 64.3 178 32.0
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 1.9e-08 63.5 174 31.0
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 1.9e-08 63.5 174 30.5
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 2.4e-08 63.2 174 31.6
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 5.4e-08 62.0 182 31.9
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 7.1e-08 61.6 183 31.1
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 7.1e-08 61.6 180 29.4
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 9.3e-08 61.2 179 31.8
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 9.3e-08 61.2 179 31.8
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 9.3e-08 61.2 184 29.9
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.2e-07 60.8 176 31.8
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.6e-07 60.5 179 28.5
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.6e-07 60.5 182 31.3
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 2.1e-07 60.1 183 27.9
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 2.7e-07 59.7 179 29.6
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 2.7e-07 59.7 184 32.6
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 1.0e-06 57.8 178 26.4
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 1.3e-06 57.4 181 31.5
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.7e-06 57.0 179 29.1
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 2.3e-06 56.6 176 30.1
Nn4g25860 Nelumbo nucifera HOM05D005099 ORTHO05D006087 5.1e-06 55.5 97 40.2
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 6.6e-06 55.1 178 27.5
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 6.6e-06 55.1 178 27.5
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 8.7e-06 54.7 179 28.5


User provided reference genes

Program Settings