Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 4.0e-125 451.4 227 100.0
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.6e-113 412.9 225 90.7
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.6e-113 411.4 225 90.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 7.3e-111 404.1 225 89.3
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 5.2e-109 397.9 224 87.1
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 6.8e-109 397.5 225 87.1
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 8.9e-109 397.1 223 88.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.0e-108 396.0 225 88.0
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 4.4e-108 394.8 225 87.6
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.7e-107 391.7 222 86.9
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.4e-107 391.0 260 77.3
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.1e-106 390.2 222 87.4
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.2e-106 388.7 223 85.7
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 7.1e-106 387.5 222 86.0
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 7.1e-106 387.5 222 86.0
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.5e-105 385.2 223 84.8
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.6e-105 384.8 222 84.7
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 6.0e-105 384.4 219 86.3
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.0e-104 383.6 223 83.9
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.3e-104 382.5 216 86.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 3.9e-104 381.7 225 84.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 3.9e-104 381.7 222 85.1
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 5.1e-104 381.3 223 83.0
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.5e-103 379.8 222 83.3
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.9e-103 379.4 223 83.4
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-103 379.4 222 83.3
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-103 379.4 222 83.3
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.9e-103 379.4 222 86.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.5e-103 379.0 222 82.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.3e-103 378.6 216 84.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 4.3e-103 378.3 220 84.1
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 5.6e-103 377.9 223 83.0
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.8e-102 375.6 219 84.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.2e-102 374.4 216 85.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 6.2e-102 374.4 225 81.3
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 8.1e-102 374.0 222 83.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.1e-101 373.6 225 84.9
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.1e-101 373.6 221 83.7
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.4e-101 373.2 226 82.3
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.8e-101 372.9 222 82.9
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.8e-101 372.9 222 82.9
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 2.4e-101 372.5 223 83.4
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.4e-101 372.5 217 85.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 3.1e-101 372.1 225 81.3
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.0e-101 371.7 226 81.9
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.2e-101 371.3 222 82.4
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 6.8e-101 370.9 225 81.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 6.8e-101 370.9 220 81.4
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 6.8e-101 370.9 221 81.9
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 8.9e-101 370.5 215 84.2
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.2e-100 370.2 215 84.7
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.2e-100 370.2 215 84.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.2e-100 370.2 222 80.6
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 2.0e-100 369.4 221 81.4
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 5.8e-100 367.9 237 78.5
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 5.8e-100 367.9 222 79.7
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 9.9e-100 367.1 220 80.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.9e-100 367.1 220 80.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.7e-99 366.3 220 80.5
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.2e-99 365.9 220 79.5
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.9e-99 365.5 220 80.5
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.8e-99 365.2 220 80.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 4.9e-99 364.8 223 78.9
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 4.9e-99 364.8 223 78.9
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 6.4e-99 364.4 219 80.4
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 8.4e-99 364.0 221 80.5
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.4e-98 363.2 217 82.5
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.9e-98 362.8 220 80.9
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.4e-98 362.5 220 80.5
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 2.4e-98 362.5 220 81.4
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.2e-98 362.1 220 81.4
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 5.4e-98 361.3 221 80.1
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.2e-97 360.1 225 78.7
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.6e-97 359.8 219 79.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 4.6e-97 358.2 222 78.8
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 4.6e-97 358.2 222 76.6
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 7.8e-97 357.5 222 78.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.9e-96 355.1 226 82.3
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 5.1e-96 354.8 220 79.5
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.1e-95 353.6 213 80.3
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 4.3e-95 351.7 266 68.0
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 7.3e-95 350.9 225 78.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.3e-94 350.1 221 75.6
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.6e-94 348.6 217 81.1
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.4e-93 346.7 270 66.3
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.2e-92 343.6 220 75.9
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 2.6e-92 342.4 223 76.2
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.6e-92 342.4 223 77.1
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.6e-92 342.4 220 75.5
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.2e-91 339.3 210 77.6
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 3.8e-91 338.6 220 75.5
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 3.8e-91 338.6 220 75.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 6.4e-91 337.8 222 74.3
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 8.4e-91 337.4 220 73.6
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.1e-90 337.0 222 73.9
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.1e-90 337.0 220 73.6
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.1e-90 337.0 220 73.6
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.4e-90 335.9 220 73.2
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.4e-90 335.9 220 73.2
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.4e-90 335.9 220 73.2
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 3.2e-90 335.5 224 73.7
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.7e-89 332.4 222 73.0
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.5e-89 332.0 187 87.2
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 3.5e-89 332.0 225 75.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.6e-86 323.2 221 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.2e-82 308.5 223 68.6
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-81 306.6 213 70.0
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.6e-81 305.1 215 69.3
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 6.0e-81 304.7 213 69.0
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.3e-80 303.5 216 68.5
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 3.7e-78 295.4 220 66.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 3.7e-78 295.4 218 69.3
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.4e-77 293.5 212 66.0
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.2e-76 290.4 177 79.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.7e-73 279.3 180 73.3
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.2e-66 255.4 141 88.7
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.6e-65 253.4 216 60.6
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 8.5e-59 231.1 125 89.6
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 7.2e-58 228.0 231 50.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.1e-57 226.5 128 85.2
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.0e-56 224.2 130 83.8
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 6.7e-56 221.5 132 83.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.8e-54 215.3 122 84.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 3.0e-48 196.1 159 65.4
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.0e-43 181.0 132 70.5
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.7e-43 180.3 124 70.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.2e-42 175.6 115 73.9
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 6.1e-41 171.8 107 76.6
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 8.8e-40 167.9 95 85.3
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.4e-37 159.8 92 85.9
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.6e-36 156.4 93 81.7
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 8.0e-33 144.8 91 73.6
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.0e-31 140.2 189 40.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.7e-30 136.0 202 40.1
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.9e-28 128.6 189 37.6
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 7.7e-28 128.3 77 77.9
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.3e-27 127.5 189 37.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 8.5e-27 124.8 94 66.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.1e-26 124.4 219 35.2
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 3.2e-26 122.9 181 39.2
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.1e-25 120.2 200 39.0
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 3.6e-25 119.4 73 79.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 3.0e-24 116.3 71 74.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 5.2e-24 115.5 198 37.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.3e-22 110.9 194 36.6
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.8e-22 109.8 75 72.0
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 6.3e-22 108.6 63 81.0
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.8e-21 107.1 88 61.4
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.4e-21 106.7 204 35.3
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 3.5e-20 102.8 98 58.2
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.0e-19 101.3 60 78.3
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 3.8e-19 99.4 92 60.9
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 6.6e-19 98.6 172 34.9
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.1e-18 97.8 58 82.8
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 6.1e-17 92.0 95 55.8
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 6.1e-17 92.0 70 65.7
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 8.0e-17 91.7 59 76.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.6e-15 86.7 46 84.8
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 8.3e-14 81.6 68 58.8
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.6e-12 77.4 91 51.6
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 7.8e-12 75.1 91 49.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 1.9e-10 70.5 68 52.9
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 3.3e-10 69.7 65 53.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.3e-10 69.7 66 56.1
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 4.3e-10 69.3 64 54.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.2e-09 67.8 59 57.6
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.1e-09 67.0 39 84.6
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 4.7e-09 65.9 57 57.9
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 1.2e-07 61.2 48 64.6


User provided reference genes

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