Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 2146.7 1122 100.0
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1384.0 1122 66.9
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1338.6 1113 65.2
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1285.4 1132 62.2
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1259.2 1133 61.3
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1256.9 1124 59.5
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1253.4 1116 61.0
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1224.2 1116 60.5
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1216.1 1128 58.6
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1208.7 1118 59.8
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1204.5 1146 58.3
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1194.9 1125 58.3
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1194.9 1127 58.4
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1181.8 1112 59.0
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1179.9 1092 58.7
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1174.1 1116 58.2
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1162.9 1122 57.6
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1153.7 1115 57.8
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1153.7 1127 57.6
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1132.9 1115 56.5
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1115.5 954 62.5
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1104.0 1005 59.1
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1101.7 1116 56.6
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1090.5 954 60.9
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1085.1 1125 54.0
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 9.2e-311 1070.5 1036 57.6
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 2.9e-309 1065.4 1139 52.3
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 1.6e-307 1059.7 1137 52.9
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 3.3e-305 1052.0 1136 51.6
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 2.8e-304 1048.9 1146 52.5
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 1.4e-300 1036.6 926 60.4
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 1.3e-298 1030.0 1136 50.7
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 5.6e-297 1024.6 1093 53.2
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 8.1e-296 1020.8 927 59.5
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 6.9e-295 1017.7 1154 50.6
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 4.5e-294 1015.0 1143 50.6
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 2.9e-293 1012.3 1122 49.9
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 8.4e-293 1010.7 1146 50.3
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 1.4e-292 1010.0 1132 50.3
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 1.2e-291 1006.9 1122 50.2
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 1.2e-291 1006.9 1119 50.1
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 1.8e-290 1003.0 1124 50.1
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 2.8e-288 995.7 1132 49.3
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 6.2e-288 994.6 1125 49.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 7.6e-286 987.6 1118 49.3
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 1.0e-285 987.3 1119 49.2
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 8.4e-285 984.2 945 56.1
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 1.4e-284 983.4 1146 49.0
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 1.8e-282 976.5 1128 49.2
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 3.0e-282 975.7 1148 48.6
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 2.4e-279 966.1 1118 48.7
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 2.5e-276 956.1 1128 48.5
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 5.7e-273 944.9 1132 48.1
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 3.4e-270 935.6 1148 46.7
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 5.0e-269 931.8 1129 47.6
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 6.1e-267 924.9 866 58.8
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 3.7e-264 915.6 1132 48.8
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 3.7e-264 915.6 1032 49.4
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 7.7e-262 907.9 803 60.6
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.4e-255 887.1 852 57.6
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 8.0e-251 871.3 915 52.1
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 1.7e-237 827.0 963 49.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 5.2e-234 815.5 747 58.8
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 5.2e-226 788.9 748 57.5
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 4.9e-224 782.3 749 57.7
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 4.7e-219 765.8 1138 42.5
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.7e-213 747.3 984 45.7
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.1e-204 718.0 1068 40.5
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.6e-203 714.1 1122 40.9
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 8.1e-203 711.8 701 54.2
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.9e-191 674.1 712 53.8
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 4.3e-180 636.3 631 56.1
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 6.2e-171 605.9 900 41.7
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.4e-170 604.7 1026 37.5
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 7.9e-150 535.8 1147 33.8
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 1.6e-134 485.0 1179 31.5
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.8e-130 471.5 1105 32.3
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.7e-128 464.9 1167 31.6
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 5.2e-125 453.4 1202 29.9
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 9.3e-82 309.7 346 53.8
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 6.4e-67 260.4 1049 25.4
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 7.6e-52 210.3 384 37.5
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.3e-48 199.5 318 40.9
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.1e-33 149.1 120 65.0
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 1.6e-28 132.9 279 35.1
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.0e-28 132.5 104 64.4
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 3.5e-28 131.7 104 64.4
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 2.2e-14 85.9 115 39.1
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 4.7e-09 68.2 81 48.1
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 8.8e-08 63.9 100 42.0
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 4.4e-07 61.6 277 23.8


User provided reference genes

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