Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 1.0e-122 443.4 216 100.0
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 1.6e-107 392.9 215 87.9
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 1.8e-103 379.4 215 85.6
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 1.2e-102 376.7 217 83.4
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.2e-102 376.7 215 83.3
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 5.9e-102 374.4 217 83.9
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 5.9e-102 374.4 218 83.5
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 7.7e-102 374.0 217 83.9
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.2e-101 372.5 217 83.9
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 2.9e-101 372.1 217 82.5
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 2.9e-101 372.1 217 83.4
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 5.0e-101 371.3 213 84.5
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 6.5e-101 370.9 215 84.2
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 6.5e-101 370.9 215 84.2
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 1.5e-100 369.8 215 83.7
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 1.9e-100 369.4 215 80.9
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 2.5e-100 369.0 217 83.9
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 4.2e-100 368.2 215 83.7
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 5.5e-100 367.9 215 82.8
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 9.4e-100 367.1 215 80.5
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 1.6e-99 366.3 215 83.7
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 2.1e-99 365.9 217 82.0
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.7e-99 365.5 212 84.0
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 2.7e-99 365.5 217 82.9
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 4.7e-99 364.8 217 82.0
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 4.7e-99 364.8 217 81.6
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 4.7e-99 364.8 213 83.1
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 6.1e-99 364.4 213 84.0
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 1.8e-98 362.8 215 83.3
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 1.8e-98 362.8 213 84.0
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 2.3e-98 362.5 213 83.6
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 3.0e-98 362.1 215 80.9
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 3.0e-98 362.1 217 81.6
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 3.0e-98 362.1 217 81.1
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.0e-98 361.7 217 81.1
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 5.2e-98 361.3 209 83.7
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 6.7e-98 360.9 217 82.0
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 6.7e-98 360.9 215 83.3
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.1e-97 360.1 217 81.6
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 1.5e-97 359.8 215 83.3
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 1.5e-97 359.8 230 78.7
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.5e-97 359.8 217 80.2
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.5e-97 359.8 212 81.6
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.5e-97 359.8 213 81.2
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 2.0e-97 359.4 215 81.4
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 2.0e-97 359.4 216 81.0
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 2.6e-97 359.0 218 82.1
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 2.6e-97 359.0 219 79.9
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.3e-97 358.6 213 82.2
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 4.4e-97 358.2 215 81.9
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 4.4e-97 358.2 215 81.9
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 7.5e-97 357.5 213 82.2
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 9.7e-97 357.1 212 81.1
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 1.3e-96 356.7 214 82.7
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 1.3e-96 356.7 219 80.4
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 2.2e-96 355.9 216 78.2
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 4.8e-96 354.8 213 81.2
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 4.8e-96 354.8 213 81.2
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 6.3e-96 354.4 215 81.4
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 6.3e-96 354.4 216 78.2
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 6.3e-96 354.4 216 78.2
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 8.2e-96 354.0 216 78.2
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 1.8e-95 352.8 213 80.8
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 2.4e-95 352.4 213 80.8
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.1e-95 352.1 215 80.5
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 3.1e-95 352.1 216 77.3
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 3.1e-95 352.1 213 80.8
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 4.1e-95 351.7 213 80.8
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 4.1e-95 351.7 213 80.8
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 4.1e-95 351.7 214 81.3
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 7.0e-95 350.9 216 77.8
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.6e-94 349.7 217 80.2
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 2.0e-94 349.4 217 78.8
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 4.5e-94 348.2 214 79.4
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 4.5e-94 348.2 214 79.4
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 7.7e-94 347.4 219 78.5
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 1.0e-93 347.1 200 84.5
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 1.0e-93 347.1 216 78.7
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.3e-93 346.7 214 78.5
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 2.9e-93 345.5 215 78.6
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 8.5e-93 344.0 216 74.1
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 1.1e-92 343.6 217 78.8
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 1.6e-91 339.7 209 76.6
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 3.0e-90 335.5 211 80.1
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 5.7e-89 331.3 201 81.6
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 1.7e-88 329.7 215 75.3
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 2.2e-88 329.3 217 74.2
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.2e-86 323.6 217 76.0
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 1.2e-86 323.6 213 77.0
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 5.9e-86 321.2 201 78.6
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 6.1e-83 311.2 211 71.6
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 1.4e-82 310.1 216 73.6
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 3.0e-82 308.9 193 79.3
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 8.8e-82 307.4 217 70.5
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 2.0e-81 306.2 217 70.0
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.3e-80 303.5 207 70.5
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.6e-78 296.6 218 68.8
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 3.5e-78 295.4 188 78.2
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 2.3e-77 292.7 213 71.4
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 3.0e-74 282.3 184 71.7
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 1.8e-71 273.1 198 67.2
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.0e-70 269.6 188 67.0
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.0e-69 265.8 144 86.8
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 8.6e-69 264.2 263 57.0
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 5.2e-66 255.0 150 80.7
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.2e-65 253.8 213 59.2
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 7.8e-62 241.1 148 79.1
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 7.8e-62 241.1 150 78.7
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 1.6e-59 233.4 147 77.6
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.9e-55 219.9 163 62.0
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 3.8e-48 195.7 168 53.6
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.1e-47 192.2 103 87.4
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 4.0e-34 149.1 212 43.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 8.1e-27 124.8 85 69.4
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 4.0e-26 122.5 66 86.4
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 9.9e-25 117.9 97 60.8
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 1.9e-23 113.6 87 62.1
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.2e-22 110.9 68 75.0
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 6.7e-21 105.1 84 61.9
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 4.9e-16 89.0 66 66.7
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 2.1e-11 73.6 146 37.0
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 3.8e-08 62.8 146 28.8
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.1e-07 61.2 142 28.2
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.4e-07 60.8 142 27.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.4e-07 60.8 142 27.5
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.4e-07 60.8 164 26.8
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 3.2e-07 59.7 142 27.5
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 5.5e-07 58.9 41 65.9
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 7.2e-07 58.5 142 28.2
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 27.5
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.6e-06 57.4 165 26.1
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 2.7e-06 56.6 142 31.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.7e-06 56.6 142 28.9
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.7e-06 56.6 142 28.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 4.6e-06 55.8 142 28.9
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 4.6e-06 55.8 196 24.5
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 6.1e-06 55.5 142 27.5
MELO3C013239.2 Cucumis melo HOM05D000031 ORTHO05D000030 6.1e-06 55.5 38 60.5


User provided reference genes

Program Settings