Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G183002 Manihot esculenta HOM05D012386 ORTHO05D002688 2.3e-90 335.5 162 100.0
QL06p003849 Quercus lobata HOM05D012386 ORTHO05D002688 1.2e-43 180.3 158 58.2
Cfa015598 Carpinus fangiana HOM05D012386 ORTHO05D002688 7.4e-41 171.0 158 56.3
Haze_00946 Corylus avellana HOM05D012386 ORTHO05D002688 6.9e-39 164.5 158 54.4
CANSAT78G0906 Cannabis sativa HOM05D012386 ORTHO05D002688 3.8e-37 158.7 154 52.6
Manes.05G124000 Manihot esculenta HOM05D005504 ORTHO05D002688 2.8e-32 142.5 107 67.3
Potri.005G252500 Populus trichocarpa HOM05D005504 ORTHO05D002688 2.7e-27 125.9 106 60.4
Duzib093G0882 Durio zibethinus HOM05D005504 ORTHO05D002688 1.8e-26 123.2 105 60.0
QL02p014709 Quercus lobata HOM05D005504 ORTHO05D002688 1.8e-26 123.2 118 54.2
Haze_23085 Corylus avellana HOM05D012386 ORTHO05D002688 6.7e-26 121.3 118 53.4
Thecc.04G224300 Theobroma cacao HOM05D012386 ORTHO05D002688 1.0e-18 97.4 90 53.3
Ah.01g010920 Amaranthus hybridus HOM05D005504 ORTHO05D002688 4.4e-17 92.0 103 44.7
Ah.10g026380 Amaranthus hybridus HOM05D005504 ORTHO05D002688 1.3e-16 90.5 103 43.7
EL10Ac6g13234 Beta vulgaris HOM05D000034 ORTHO05D002688 8.3e-16 87.8 102 44.1
AUR62040606 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.6e-14 83.6 108 41.7
vmacro05860 Vaccinium macrocarpon HOM05D000034 ORTHO05D002688 1.6e-14 83.6 113 39.8
EL10Ac4g08776 Beta vulgaris HOM05D005504 ORTHO05D002688 2.0e-14 83.2 96 43.8
Atru.chr5.1596 Acer truncatum HOM05D005504 ORTHO05D002688 7.7e-14 81.3 95 42.1
Atru.chr4.843 Acer truncatum HOM05D000034 ORTHO05D002688 1.0e-13 80.9 95 42.1
Hma1.2p1_0076F.1_g039500 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.9e-13 79.3 103 39.8
Hma1.2p1_0187F.1_g082350 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.8e-13 79.0 120 39.2
Hma1.2p1_1109F.1_g257970 Hydrangea macrophylla HOM05D005504 ORTHO05D002688 5.0e-13 78.6 101 39.6
CSS0028977 Camellia sinensis var. sinensis HOM05D005504 ORTHO05D002688 6.5e-13 78.2 105 42.9
Sabra05G0195900 Salix brachista HOM05D012386 ORTHO05D002688 3.2e-12 75.9 75 56.0
AUR62042045 Chenopodium quinoa HOM05D012386 ORTHO05D002688 7.2e-12 74.7 99 39.4
TWI09G1336 Tripterygium wilfordii HOM05D012386 ORTHO05D002688 7.2e-12 74.7 98 42.9
Rhsim12G0045600 Rhododendron simsii HOM05D000034 ORTHO05D002688 9.5e-12 74.3 112 36.6
CSS0036183 Camellia sinensis var. sinensis HOM05D005504 ORTHO05D002688 1.6e-11 73.6 105 40.0
EL10Ac7g17364 Beta vulgaris HOM05D005504 ORTHO05D002688 2.7e-11 72.8 102 40.2
ECA233G5926 Erigeron canadensis HOM05D012386 ORTHO05D002688 3.6e-11 72.4 98 38.8
CSS0041263 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 1.4e-10 70.5 103 40.8
CSS0003405 Camellia sinensis var. sinensis HOM05D005504 ORTHO05D002688 1.8e-10 70.1 105 41.0
AUR62044079 Chenopodium quinoa HOM05D012386 ORTHO05D002688 5.2e-10 68.6 105 41.0
Hma1.2p1_0317F.1_g123430 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.8e-10 68.2 81 40.7
CSS0015173 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 1.2e-09 67.4 96 39.6
CSS0049663 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 1.2e-09 67.4 96 39.6
Hma1.2p1_0008F-2.1_g005830 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.0e-09 66.6 77 41.6
CSS0010294 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D002688 3.4e-09 65.9 103 39.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.4e-09 65.9 93 36.6
ECA233G4621 Erigeron canadensis HOM05D000911 ORTHO05D000890 3.4e-09 65.9 93 36.6
QL02p021656 Quercus lobata HOM05D000034 ORTHO05D000037 7.5e-09 64.7 108 35.2
DCAR_005138 Daucus carota HOM05D000034 ORTHO05D002688 9.8e-09 64.3 120 32.5
Lsat_1_v5_gn_7_17241 Lactuca sativa HOM05D005504 ORTHO05D002688 1.3e-08 63.9 87 41.4
ECA232G2669 Erigeron canadensis HOM05D005504 ORTHO05D002688 2.2e-08 63.2 113 34.5
HanXRQChr12g0355561 Helianthus annuus HOM05D005504 ORTHO05D002688 2.8e-08 62.8 106 34.9
QL08p058251 Quercus lobata HOM05D012386 ORTHO05D010611 3.7e-08 62.4 92 40.2
ECA238G0287 Erigeron canadensis HOM05D005504 ORTHO05D002688 4.9e-08 62.0 93 34.4
EL10Ac5g12237 Beta vulgaris HOM05D005504 ORTHO05D002688 1.1e-07 60.8 82 39.0
EL10Ac4g08855 Beta vulgaris HOM05D012386 ORTHO05D002688 3.1e-07 59.3 107 31.8
Hma1.2p1_1121F.1_g259230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.1e-07 58.9 70 35.7
Lsat_1_v5_gn_5_85721 Lactuca sativa HOM05D000039 ORTHO05D000870 5.4e-07 58.5 79 36.7
Lsat_1_v5_gn_9_108520 Lactuca sativa HOM05D056539 ORTHO05D002688 5.4e-07 58.5 79 36.7
Lsat_1_v5_gn_9_18201 Lactuca sativa HOM05D056539 ORTHO05D002688 7.0e-07 58.2 79 36.7
Gorai.009G186900 Gossypium raimondii HOM05D005504 ORTHO05D002688 9.2e-07 57.8 42 69.0
QL09p005462 Quercus lobata HOM05D000034 ORTHO05D000037 2.0e-06 56.6 97 34.0
Ah.05g174390 Amaranthus hybridus HOM05D005504 ORTHO05D002688 2.7e-06 56.2 76 40.8
Medtr3g027145 Medicago truncatula HOM05D005504 ORTHO05D002688 4.5e-06 55.5 110 33.6
Medtr5g086750 Medicago truncatula HOM05D005504 ORTHO05D002688 4.5e-06 55.5 110 33.6
Medtr7g094380 Medicago truncatula HOM05D005504 ORTHO05D002688 4.5e-06 55.5 110 33.6
arahy.Tifrunner.gnm1.ann1.W93U0I Arachis hypogaea HOM05D000034 ORTHO05D002688 5.9e-06 55.1 70 35.7
arahy.Tifrunner.gnm1.ann1.V1HUJD Arachis hypogaea HOM05D000034 ORTHO05D002688 7.7e-06 54.7 69 36.2


User provided reference genes

Program Settings