Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.0e-188 663.3 351 100.0
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.3e-111 407.1 335 58.8
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.1e-108 397.5 356 58.4
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 1.4e-108 397.1 354 58.2
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 3.1e-108 396.0 339 61.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.0e-107 393.3 353 59.5
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 7.6e-107 391.3 352 56.5
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.9e-106 388.7 353 58.4
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 7.3e-102 374.8 352 55.4
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 3.1e-100 369.4 363 54.5
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 9.0e-100 367.9 358 54.5
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 4.9e-98 362.1 364 54.4
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.9e-97 360.1 337 53.7
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 8.7e-95 351.3 338 53.0
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 8.7e-95 351.3 341 53.1
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 3.3e-94 349.4 338 53.0
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 2.8e-93 346.3 340 51.8
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 4.8e-93 345.5 332 52.7
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.2e-93 345.1 360 51.9
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.2e-93 345.1 360 51.9
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 6.2e-93 345.1 360 51.9
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 1.8e-92 343.6 332 52.7
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 9.0e-92 341.3 355 52.1
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 9.0e-92 341.3 348 51.4
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.2e-91 340.9 332 52.4
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.6e-91 339.7 354 51.1
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.6e-91 339.7 335 52.5
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 4.5e-91 339.0 367 51.0
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 4.5e-91 339.0 355 52.4
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.3e-90 337.4 352 51.4
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.7e-90 337.0 333 52.6
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 3.8e-90 335.9 367 49.0
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 4.9e-90 335.5 368 49.2
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 6.4e-90 335.1 346 49.4
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 2.4e-89 333.2 333 52.0
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.6e-88 330.5 345 51.3
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 2.1e-88 330.1 332 50.0
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 2.7e-88 329.7 355 51.0
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.5e-88 329.3 343 51.3
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 7.9e-88 328.2 351 49.3
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 6.7e-87 325.1 330 49.4
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 2.0e-83 313.5 320 50.9
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 3.4e-83 312.8 343 47.8
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 1.7e-82 310.5 341 44.6
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 4.9e-82 308.9 352 47.7
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 6.5e-82 308.5 351 47.6
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 6.5e-82 308.5 348 48.3
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.9e-81 307.0 351 46.7
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 3.2e-81 306.2 343 46.6
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 3.5e-80 302.8 355 43.9
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 4.6e-80 302.4 323 48.9
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 6.0e-80 302.0 355 43.9
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 3.9e-79 299.3 323 49.5
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 6.7e-79 298.5 350 46.3
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 5.7e-78 295.4 333 47.7
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 7.4e-78 295.0 325 48.3
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 1.3e-77 294.3 353 47.0
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 1.3e-77 294.3 348 47.1
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 4.8e-77 292.4 300 50.3
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 2.4e-76 290.0 249 61.0
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 4.1e-76 289.3 360 44.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 6.9e-76 288.5 345 47.0
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 2.6e-75 286.6 354 45.8
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 3.4e-75 286.2 354 46.0
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 2.9e-74 283.1 343 46.4
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 7.1e-73 278.5 333 47.4
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 9.3e-73 278.1 344 44.8
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 2.7e-72 276.6 358 46.1
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 4.6e-72 275.8 337 44.5
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.3e-71 274.2 352 44.9
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 8.7e-71 271.6 360 44.4
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 2.8e-69 266.5 363 41.9
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 3.7e-69 266.2 355 42.8
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 2.4e-68 263.5 345 43.2
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 4.1e-68 262.7 329 45.6
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 4.1e-68 262.7 329 45.6
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 4.1e-68 262.7 329 45.6
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 4.1e-68 262.7 354 43.5
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 1.5e-67 260.8 353 43.3
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.4e-67 259.6 333 45.9
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 4.5e-67 259.2 337 43.9
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.7e-66 257.3 325 43.7
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.7e-66 257.3 325 43.4
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 2.9e-66 256.5 319 44.2
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 3.8e-66 256.1 348 42.0
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 8.5e-66 255.0 347 43.8
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 7.2e-65 251.9 315 44.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 7.2e-65 251.9 336 43.2
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.8e-63 247.3 341 42.5
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 3.0e-63 246.5 348 41.7
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 3.9e-63 246.1 283 47.7
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 3.7e-61 239.6 305 46.6
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 6.3e-61 238.8 330 43.6
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 6.7e-55 218.8 330 39.7
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 1.8e-52 210.7 207 47.3
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 2.0e-51 207.2 324 38.6
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 1.3e-50 204.5 339 38.9
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 1.1e-49 201.4 333 36.9
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.6e-48 197.6 192 47.9
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.7e-48 196.8 336 39.9
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 3.6e-48 196.4 249 42.6
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 2.8e-45 186.8 309 37.9
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 9.1e-44 181.8 325 36.6
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 1.1e-41 174.9 356 35.4
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 8.8e-39 165.2 317 34.1
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 1.5e-38 164.5 336 33.6
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.4e-36 157.9 251 41.0
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.6e-35 154.5 130 55.4
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 5.0e-34 149.4 175 44.0
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 6.5e-34 149.1 170 44.7
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.2e-33 146.7 183 45.4
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 6.1e-32 142.5 151 45.0
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.2e-30 138.3 143 48.3
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.7e-29 134.4 292 29.5
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 5.9e-27 125.9 98 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.3e-26 124.8 266 30.5
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 6.8e-23 112.5 90 55.6
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 2.7e-19 100.5 111 43.2
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 2.7e-19 100.5 111 43.2
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 2.9e-18 97.1 129 41.9
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 6.6e-18 95.9 109 44.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 6.6e-18 95.9 109 44.0
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.1e-17 95.1 183 32.2
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-17 95.1 108 44.4
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-17 95.1 108 44.4
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 2.5e-17 94.0 108 43.5
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 4.3e-17 93.2 96 46.9
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 1.2e-16 91.7 109 42.2
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 3.6e-16 90.1 108 42.6
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 6.8e-15 85.9 152 32.9
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 1.2e-14 85.1 99 41.4
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 1.3e-13 81.6 81 50.6
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 1.1e-12 78.6 66 57.6
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 3.2e-12 77.0 61 55.7
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 8.9e-07 58.9 111 31.5


User provided reference genes

Program Settings