Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.3e-179 632.9 306 100.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 3.8e-86 322.4 312 54.5
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 2.4e-85 319.7 324 54.0
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 2.1e-76 290.0 314 50.3
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.9e-74 283.5 339 46.3
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 2.1e-73 280.0 355 45.4
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.8e-73 279.6 318 48.4
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 6.9e-72 275.0 319 49.2
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.5e-71 273.9 321 47.4
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.5e-69 266.5 316 47.2
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 4.6e-68 262.3 327 45.6
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.5e-66 257.3 315 45.4
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.5e-66 256.5 315 45.4
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.3e-65 254.2 327 43.7
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.6e-65 253.8 312 44.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.8e-64 250.4 315 45.4
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 5.8e-63 245.4 309 44.7
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.8e-62 242.7 320 42.2
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 2.1e-60 236.9 324 42.0
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 4.6e-60 235.7 310 43.5
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 4.6e-60 235.7 316 44.3
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 6.1e-60 235.3 296 43.6
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 7.9e-60 235.0 317 41.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.8e-59 233.8 314 41.7
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 2.3e-59 233.4 324 44.8
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 3.9e-59 232.6 323 44.0
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 3.9e-59 232.6 301 44.9
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.1e-58 231.1 377 39.0
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.1e-58 231.1 305 42.3
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.5e-58 230.7 309 42.7
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.3e-58 229.2 312 42.9
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 7.4e-58 228.4 314 41.1
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 7.4e-58 228.4 333 39.0
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.7e-58 228.0 334 38.3
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.6e-57 227.3 304 43.1
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.6e-57 227.3 305 44.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 2.2e-57 226.9 313 44.4
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.8e-57 226.5 302 42.1
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.1e-56 224.6 385 36.4
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.1e-56 224.6 313 39.3
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.4e-56 224.2 319 40.4
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 1.8e-56 223.8 325 40.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.4e-56 223.4 327 39.8
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 3.1e-56 223.0 299 42.8
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 3.1e-56 223.0 305 41.6
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 4.1e-56 222.6 359 38.2
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 5.3e-56 222.2 298 42.6
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.0e-56 221.5 331 38.1
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.2e-55 221.1 318 40.6
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.2e-55 221.1 357 38.9
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.5e-55 220.7 354 39.3
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 2.0e-55 220.3 318 39.6
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 3.4e-55 219.5 311 40.2
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 4.5e-55 219.2 313 40.6
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.0e-54 218.0 316 39.9
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 8.5e-54 214.9 299 41.5
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.1e-53 214.5 322 40.4
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 5.5e-53 212.2 297 40.7
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 7.2e-53 211.8 310 40.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.1e-52 210.3 305 38.7
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 5.1e-51 205.7 259 45.6
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.7e-51 205.3 296 39.9
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 3.7e-49 199.5 258 45.0
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 8.2e-49 198.4 328 37.5
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.1e-48 198.0 306 40.2
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.1e-48 196.4 312 38.1
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.2e-47 194.5 311 40.2
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 4.7e-44 182.6 309 35.9
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 6.1e-44 182.2 302 36.1
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 5.7e-42 175.6 141 56.0
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 9.7e-42 174.9 314 36.3
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-41 174.1 315 36.5
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 4.8e-41 172.6 298 38.3
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.8e-41 172.6 293 33.8
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.4e-40 171.0 284 39.8
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.1e-40 168.3 123 58.5
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-39 167.5 267 37.5
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 2.6e-39 166.8 136 58.1
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 2.6e-39 166.8 136 58.1
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 7.7e-39 165.2 294 36.4
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.2e-38 163.7 299 34.8
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 3.8e-38 162.9 123 56.9
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 5.0e-38 162.5 361 32.4
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.6e-36 157.5 125 53.6
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.7e-36 156.8 271 35.8
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 8.0e-36 155.2 320 31.6
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.0e-35 154.8 282 33.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 5.2e-35 152.5 308 32.8
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.5e-34 151.0 300 33.0
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 3.3e-34 149.8 132 53.0
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 5.7e-34 149.1 394 28.9
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.4e-34 148.7 123 52.0
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.3e-33 147.9 300 32.3
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-33 147.1 395 29.1
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.7e-33 146.4 299 31.4
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 4.8e-33 146.0 293 31.1
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.1e-32 144.8 296 31.1
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.4e-32 144.4 117 56.4
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 3.1e-32 143.3 267 33.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 5.3e-32 142.5 277 34.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 5.3e-32 142.5 148 43.9
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.0e-30 138.3 115 48.7
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.3e-30 137.9 321 31.2
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.7e-30 137.5 314 30.3
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.2e-30 137.1 118 50.8
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 5.0e-30 136.0 191 49.2
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 6.5e-30 135.6 130 44.6
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 4.2e-29 132.9 143 46.2
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 7.2e-29 132.1 112 48.2
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 9.4e-29 131.7 225 37.8
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.2e-28 131.3 296 30.4
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.6e-28 131.0 268 32.1
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 4.7e-28 129.4 138 45.7
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.0e-27 128.3 303 29.0
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 6.8e-27 125.6 141 44.7
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 6.8e-27 125.6 247 32.8
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 8.8e-27 125.2 132 43.9
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.5e-26 124.4 131 44.3
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.6e-26 123.6 299 29.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 5.7e-26 122.5 319 29.8
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 9.8e-26 121.7 291 29.2
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 3.7e-25 119.8 299 29.1
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 3.7e-25 119.8 299 29.1
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 3.7e-25 119.8 299 30.8
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 8.3e-25 118.6 280 29.3
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 8.3e-25 118.6 292 29.8
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.1e-24 118.2 245 33.1
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.8e-24 117.5 292 29.5
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 3.1e-24 116.7 279 28.7
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 3.1e-24 116.7 279 28.7
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 9.1e-24 115.2 299 29.8
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 9.1e-24 115.2 252 31.3
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 9.1e-24 115.2 252 31.3
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-23 114.8 290 30.0
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-23 114.8 118 43.2
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.6e-23 114.4 298 28.9
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 3.5e-23 113.2 139 37.4
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.2e-22 110.5 124 45.2
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 2.9e-22 110.2 125 43.2
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.1e-21 108.2 129 39.5
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.9e-21 107.5 140 39.3
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 3.2e-21 106.7 245 30.2
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 4.2e-21 106.3 88 53.4
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.2e-20 104.8 135 35.6
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 4.7e-20 102.8 117 39.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 4.7e-20 102.8 117 39.3
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.0e-19 101.7 129 37.2
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-19 101.3 117 38.5
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 4.0e-19 99.8 117 38.5
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 7.5e-18 95.5 112 41.1
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 9.8e-18 95.1 66 56.1
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 8.3e-17 92.0 104 40.4
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 4.1e-16 89.7 88 53.4
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.6e-15 87.8 67 50.7
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 4.5e-15 86.3 221 30.3
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 6.6e-14 82.4 123 37.4
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 8.6e-14 82.0 209 32.1
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 1.5e-13 81.3 51 66.7
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 8.0e-12 75.5 112 36.6
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 1.0e-11 75.1 63 54.0
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.0e-11 73.2 105 35.2
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 6.8e-11 72.4 117 32.5
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-10 71.6 226 26.5
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-10 71.6 226 26.5
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.1e-08 65.1 54 61.1
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-07 60.8 213 27.2
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 3.5e-07 60.1 38 65.8
Migut.G00446 Erythranthe guttata HOM05D003860 ORTHO05D004218 3.9e-06 56.6 181 30.9


User provided reference genes

Program Settings