Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 4.3e-38 161.0 91 100.0
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 7.1e-25 117.1 81 74.1
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 1.3e-21 106.3 97 56.7
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 6.3e-21 104.0 95 65.3
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 6.9e-20 100.5 97 55.7
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.0e-18 96.7 76 67.1
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 5.0e-18 94.4 100 55.0
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 6.5e-18 94.0 101 57.4
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 6.5e-18 94.0 100 57.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 6.5e-18 94.0 94 56.4
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 8.5e-18 93.6 101 56.4
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 1.4e-17 92.8 98 57.1
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 3.2e-17 91.7 99 54.5
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 3.2e-17 91.7 101 56.4
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 7.2e-17 90.5 94 58.5
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 9.3e-17 90.1 78 66.7
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 9.3e-17 90.1 95 52.6
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.7e-16 88.6 97 50.5
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 3.6e-16 88.2 100 60.0
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 6.1e-16 87.4 75 61.3
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.4e-15 86.3 80 56.2
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.8e-15 85.9 80 55.0
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.8e-15 85.9 80 55.0
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.8e-15 85.9 96 55.2
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 2.3e-15 85.5 95 54.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.0e-15 85.1 91 59.3
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.0e-15 85.1 91 59.3
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.9e-15 84.7 94 47.9
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 6.7e-15 84.0 83 55.4
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 6.7e-15 84.0 89 56.2
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-14 83.2 91 58.2
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.5e-14 82.8 104 58.7
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.9e-14 82.4 96 52.1
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.5e-14 82.0 81 66.7
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.3e-14 81.6 97 48.5
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 4.3e-14 81.3 96 50.0
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 5.7e-14 80.9 92 43.5
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 5.7e-14 80.9 96 47.9
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 7.4e-14 80.5 97 51.5
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 7.4e-14 80.5 97 50.5
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 9.7e-14 80.1 79 57.0
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.7e-13 79.3 68 60.3
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.7e-13 79.3 94 45.7
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 2.2e-13 79.0 103 47.6
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 2.8e-13 78.6 79 49.4
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 4.8e-13 77.8 92 45.7
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 4.8e-13 77.8 61 62.3
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 4.8e-13 77.8 74 58.1
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.1e-12 76.6 94 43.6
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 1.1e-12 76.6 94 43.6
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 2.4e-12 75.5 96 41.7
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 2.4e-12 75.5 59 66.1
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 3.1e-12 75.1 94 47.9
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 5.3e-12 74.3 80 52.5
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 9.1e-12 73.6 92 44.6
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 9.1e-12 73.6 97 47.4
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 9.1e-12 73.6 106 44.3
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 2.0e-11 72.4 104 45.2
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 3.4e-11 71.6 96 46.9
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 3.4e-11 71.6 104 51.0
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.4e-11 71.6 84 51.2
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 3.4e-11 71.6 90 44.4
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 4.5e-11 71.2 67 56.7
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 7.7e-11 70.5 74 52.7
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 7.7e-11 70.5 74 62.2
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 7.7e-11 70.5 74 62.2
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 7.7e-11 70.5 81 48.1
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.0e-10 70.1 78 47.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.0e-10 70.1 56 58.9
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 1.0e-10 70.1 74 54.1
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.3e-10 69.7 78 50.0
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 2.2e-10 68.9 82 51.2
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 2.2e-10 68.9 84 50.0
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.9e-10 68.6 78 53.8
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 2.9e-10 68.6 69 50.7
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 2.9e-10 68.6 77 53.2
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 5.0e-10 67.8 80 48.8
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 5.0e-10 67.8 80 47.5
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 5.0e-10 67.8 79 48.1
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 6.5e-10 67.4 41 73.2
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.1e-09 66.6 91 42.9
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.1e-09 66.6 67 55.2
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 1.1e-09 66.6 82 51.2
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.4e-09 66.2 70 50.0
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.9e-09 65.9 92 42.4
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 1.9e-09 65.9 79 48.1
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 1.9e-09 65.9 88 45.5
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 2.5e-09 65.5 91 41.8
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 2.5e-09 65.5 91 41.8
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.5e-09 65.5 63 55.6
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.5e-09 65.5 70 48.6
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 7.2e-09 63.9 70 55.7
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 7.2e-09 63.9 104 40.4
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 9.4e-09 63.5 80 42.5
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 9.4e-09 63.5 90 40.0
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 9.4e-09 63.5 80 45.0
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.2e-08 63.2 104 40.4
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.2e-08 63.2 61 57.4
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 1.2e-08 63.2 72 45.8
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 2.1e-08 62.4 54 53.7
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 2.1e-08 62.4 54 53.7
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-08 62.4 54 53.7
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-08 62.4 54 53.7
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.1e-08 62.4 95 41.1
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.1e-08 62.4 59 55.9
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 2.7e-08 62.0 58 53.4
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 2.7e-08 62.0 58 53.4
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 2.7e-08 62.0 58 53.4
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 7.9e-08 60.5 54 53.7
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 7.9e-08 60.5 54 51.9
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 7.9e-08 60.5 54 51.9
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.9e-08 60.5 58 55.2
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.9e-08 60.5 58 55.2
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 7.9e-08 60.5 68 51.5
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.0e-07 60.1 69 52.2
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.0e-07 60.1 75 46.7
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 1.8e-07 59.3 64 53.1
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 3.9e-07 58.2 88 40.9
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 3.9e-07 58.2 66 43.9
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 5.1e-07 57.8 90 47.8
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.1e-06 56.6 93 36.6
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.1e-06 56.6 93 36.6
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 1.5e-06 56.2 89 37.1
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.5e-06 56.2 65 40.0
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 3.3e-06 55.1 47 55.3
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 4.4e-06 54.7 92 34.8


User provided reference genes

Program Settings